View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_323 (Length: 230)
Name: NF8518A_low_323
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_323 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 39110673 - 39110449
Alignment:
| Q |
1 |
ttcaaggaaattcttttattgaaataatacaaacttcattattattcatcaatctctgtctattcttccttaagtgattctgcaattttactagcaatac |
100 |
Q |
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| T |
39110673 |
ttcaatgaaattcttttattgaaataatacaaacttcattattattcatcaatctctgtctattcttccttaagtgattctgcaattttactagcaatac |
39110574 |
T |
|
| Q |
101 |
agtatgctgtagattgaatggttaccatagggttaacaccaactgcactaggcaaaacacttccatcacacacatacaacccttttgcttcccaactttc |
200 |
Q |
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| T |
39110573 |
agtatgctgtagattgaatggttaccatagggttaacaccaactgcactaggcaaaacacttccatcacacacatacaacccttttgcttcccaactttc |
39110474 |
T |
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| Q |
201 |
tccattctcatcaactgcaccctct |
225 |
Q |
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| T |
39110473 |
tccattctcatcaactgcaccctct |
39110449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 221
Target Start/End: Complemental strand, 31321907 - 31321798
Alignment:
| Q |
112 |
gattgaatggttaccatagggttaacaccaactgcactaggcaaaacacttccatcacacacatacaacccttttgcttcccaactttctccattctcat |
211 |
Q |
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| T |
31321907 |
gattgaatagtgatcataggattaacaccaacagcagttggaagaacactagcatcacaaacaaacaacccttcagcttcccaactctcaccattttcat |
31321808 |
T |
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| Q |
212 |
caactgcacc |
221 |
Q |
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| T |
31321807 |
caacagcacc |
31321798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 221
Target Start/End: Complemental strand, 31334160 - 31334051
Alignment:
| Q |
112 |
gattgaatggttaccatagggttaacaccaactgcactaggcaaaacacttccatcacacacatacaacccttttgcttcccaactttctccattctcat |
211 |
Q |
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| T |
31334160 |
gattgaatagtgatcataggattaacaccaacagcagttggaagaacactagcatcacaaacaaacaacccttcagcttcccaactctcaccattttcat |
31334061 |
T |
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| Q |
212 |
caactgcacc |
221 |
Q |
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| T |
31334060 |
caacagcacc |
31334051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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