View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_328 (Length: 229)
Name: NF8518A_low_328
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_328 |
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| [»] scaffold0179 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 43 - 215
Target Start/End: Complemental strand, 47289018 - 47288846
Alignment:
| Q |
43 |
gtgtgtatggtttaaaaggggtgtctacctaaaattatccttgtttatgggatcaaaattttcgaaataagacataatacatctatcaaacaaattaata |
142 |
Q |
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| T |
47289018 |
gtgtgtatggttcaaaaagggtgtctacctaaaattatccttgtttatgggatcaaaattttcgaaataaggtataatacatctatcaaacaaattaata |
47288919 |
T |
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| Q |
143 |
tcttttgactttctcacttctactaatttttgacaaataataacatttgtggtagctaaatatattttcttgg |
215 |
Q |
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| T |
47288918 |
tcttttgactttctcacttctactaatttttgacaaataagcacatttgtggtagctaaatatattttattgg |
47288846 |
T |
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Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 83 - 210
Target Start/End: Original strand, 15664320 - 15664447
Alignment:
| Q |
83 |
ttgtttatgggatcaaaattttcgaaataagacataatacatctatcaaacaaattaatatcttttgactttctcacttctactaatttttgacaaataa |
182 |
Q |
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| T |
15664320 |
ttgtttatgggatcaaaagttttaaaataagacataaaacatctatcaaacaagtaaatatcttttgattttcctatttctactagcttttgacaaataa |
15664419 |
T |
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| Q |
183 |
taacatttgtggtagctaaatatatttt |
210 |
Q |
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| T |
15664420 |
actcatttgcggtagctaaatatatttt |
15664447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 181
Target Start/End: Original strand, 30785512 - 30785609
Alignment:
| Q |
84 |
tgtttatgggatcaaaattttcgaaataagacataatacatctatcaaacaaattaatatcttttgactttctcacttctactaatttttgacaaata |
181 |
Q |
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| T |
30785512 |
tgtttaagagatcaaaagtgtcaaaataatacggaatatatctattaaacaagtgaatatattttggctttcctatttctactaatttttgacaaata |
30785609 |
T |
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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 43487262 - 43487318
Alignment:
| Q |
160 |
ttctactaatttttgacaaataataacatttgtggtagctaaatatattttcttgga |
216 |
Q |
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| T |
43487262 |
ttctactaattttcgacaaataatctcatttgtggtagctaaatatatattattgga |
43487318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 33118 - 33065
Alignment:
| Q |
22 |
gccacatgggatgtgtgtagagtgtgtatggtttaaaaggggtgtctacctaaa |
75 |
Q |
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| T |
33118 |
gccacatgggatgtgtgtatggtgtgtatggttcaaaagggatgtctacgtaaa |
33065 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 182
Target Start/End: Original strand, 42675323 - 42675387
Alignment:
| Q |
118 |
aatacatctatcaaacaaattaatatcttttgactttctcacttctactaatttttgacaaataa |
182 |
Q |
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| T |
42675323 |
aatacttctatcaaacaagtagatatcttttgactttttaatttctactagtttttgacaaataa |
42675387 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 182
Target Start/End: Original strand, 2543098 - 2543172
Alignment:
| Q |
107 |
aaataagacataatacatctatcaaacaaattaatatcttttgactttctcacttctactaatttttgacaaataa |
182 |
Q |
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| T |
2543098 |
aaataagacaaaatacatctatcaaacaagtagatgtcttttgactttctta-ttttactagtttttgataaataa |
2543172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 207
Target Start/End: Original strand, 2533533 - 2533632
Alignment:
| Q |
107 |
aaataagacataatacatctatcaaacaaattaatatcttttgactttctcacttctactaatttttgacaaataataacatttgtggtagctaaatata |
206 |
Q |
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| T |
2533533 |
aaataaaacaaaatacatctatcaaacaagtagatgtcttt-gactttcttatttttactagtttttgataaataaattcatttgtggtaactatatata |
2533631 |
T |
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