View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8518A_low_342 (Length: 228)

Name: NF8518A_low_342
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8518A_low_342
NF8518A_low_342
[»] chr4 (12 HSPs)
chr4 (71-194)||(46550700-46550823)
chr4 (71-184)||(17056615-17056728)
chr4 (64-184)||(41464789-41464911)
chr4 (71-191)||(47541803-47541925)
chr4 (61-184)||(52920071-52920197)
chr4 (70-185)||(36364861-36364972)
chr4 (73-175)||(47833504-47833607)
chr4 (110-179)||(15827158-15827229)
chr4 (71-184)||(39503498-39503615)
chr4 (71-184)||(20679835-20679951)
chr4 (66-172)||(46381481-46381590)
chr4 (71-149)||(42969971-42970049)
[»] chr3 (11 HSPs)
chr3 (71-184)||(44880254-44880367)
chr3 (74-188)||(1994847-1994961)
chr3 (71-184)||(22220210-22220324)
chr3 (61-189)||(22831157-22831286)
chr3 (71-183)||(2008400-2008514)
chr3 (71-184)||(39056869-39056981)
chr3 (61-184)||(26466312-26466438)
chr3 (61-102)||(14785011-14785052)
chr3 (71-164)||(28297695-28297788)
chr3 (127-184)||(45805583-45805640)
chr3 (70-102)||(47169336-47169368)
[»] chr1 (11 HSPs)
chr1 (71-184)||(16253029-16253142)
chr1 (71-184)||(24241478-24241591)
chr1 (61-184)||(41942781-41942905)
chr1 (71-184)||(21356794-21356907)
chr1 (71-184)||(34773414-34773528)
chr1 (63-184)||(39744154-39744276)
chr1 (71-184)||(2344969-2345083)
chr1 (86-190)||(38746028-38746133)
chr1 (114-184)||(48503922-48503992)
chr1 (82-184)||(7101359-7101464)
chr1 (71-142)||(8971471-8971543)
[»] chr8 (11 HSPs)
chr8 (61-188)||(42056676-42056803)
chr8 (71-196)||(30208187-30208313)
chr8 (61-189)||(5594779-5594908)
chr8 (71-188)||(39402020-39402140)
chr8 (71-183)||(1162111-1162222)
chr8 (61-184)||(40719878-40720005)
chr8 (61-189)||(35179155-35179285)
chr8 (71-187)||(31333156-31333273)
chr8 (71-166)||(42921385-42921480)
chr8 (71-140)||(30362012-30362082)
chr8 (71-184)||(36132676-36132788)
[»] chr7 (8 HSPs)
chr7 (61-188)||(8541427-8541556)
chr7 (71-184)||(34998528-34998643)
chr7 (61-184)||(10544991-10545118)
chr7 (69-184)||(39187948-39188065)
chr7 (71-184)||(45627408-45627524)
chr7 (127-179)||(32676800-32676852)
chr7 (138-194)||(15878797-15878853)
chr7 (71-136)||(40076687-40076753)
[»] chr5 (13 HSPs)
chr5 (61-184)||(33758794-33758918)
chr5 (83-165)||(23151436-23151518)
chr5 (71-189)||(2976440-2976556)
chr5 (68-174)||(30319817-30319924)
chr5 (71-175)||(34849451-34849556)
chr5 (71-184)||(20524598-20524711)
chr5 (71-184)||(10719746-10719860)
chr5 (72-164)||(37872196-37872291)
chr5 (147-187)||(37872302-37872342)
chr5 (71-176)||(3454259-3454364)
chr5 (71-135)||(42285218-42285283)
chr5 (63-191)||(8026460-8026593)
chr5 (71-102)||(36442607-36442638)
[»] chr2 (11 HSPs)
chr2 (71-184)||(3870024-3870141)
chr2 (73-184)||(11028779-11028891)
chr2 (61-184)||(36400857-36400981)
chr2 (61-184)||(38879517-38879642)
chr2 (76-190)||(28734069-28734183)
chr2 (71-184)||(37721449-37721563)
chr2 (71-184)||(3647418-3647532)
chr2 (71-183)||(30706143-30706258)
chr2 (71-184)||(6512073-6512191)
chr2 (69-138)||(3949309-3949378)
chr2 (61-102)||(34480112-34480153)
[»] scaffold0095 (1 HSPs)
scaffold0095 (71-188)||(35362-35482)
[»] chr6 (3 HSPs)
chr6 (61-189)||(7080148-7080279)
chr6 (73-184)||(2141236-2141348)
chr6 (71-184)||(25336908-25337023)
[»] scaffold0288 (1 HSPs)
scaffold0288 (105-184)||(18084-18163)
[»] scaffold0009 (1 HSPs)
scaffold0009 (105-192)||(25680-25767)
[»] scaffold1339 (1 HSPs)
scaffold1339 (76-184)||(56-165)


Alignment Details
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 71 - 194
Target Start/End: Original strand, 46550700 - 46550823
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtg 170  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||    
T  46550700 ttttttaataataaagagaaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtatgtgtttaaacattattgatttggtcttgtg 46550799  T
Q  171 accatggaagaatatctccttatt 194  Q
    ||||||||||||||| || |||||    
T  46550800 accatggaagaatatttcattatt 46550823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 71 - 184
Target Start/End: Complemental strand, 17056728 - 17056615
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttt-tatgtgtgtattcaaacattattgatttggtcttgt 169  Q
    ||||||||||||||||||||||||||||||||  |||| | |||||||  |||| ||| |||| |||||||||||||||||| |||||||||||||||||    
T  17056728 ttttttaataataaagaggaaattgataaaaaa-atgattaaatattttaaggacaattttttatatgtgtgtattcaaacactattgatttggtcttgt 17056630  T
Q  170 gaccatggaagaata 184  Q
    |||||||||||||||    
T  17056629 gaccatggaagaata 17056615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 64 - 184
Target Start/End: Original strand, 41464789 - 41464911
Alignment:
Q  64 agaagtattttttaataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgtgtgta--ttcaaacattattgattt 161  Q
    |||| ||||||||||||||||||| |||||||||||||| ||||| ||| ||||| || |||||||||||||||||||||  || ||  |||||||||||    
T  41464789 agaaatattttttaataataaagaagaaattgataaaaaagatgattgagtattttgaagagaatctttttatgtgtgtatgtttaagtattattgattt 41464888  T
Q  162 ggtcttgtgaccatggaagaata 184  Q
    | ||||||||||||| |||||||    
T  41464889 gatcttgtgaccatgaaagaata 41464911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 71 - 191
Target Start/End: Original strand, 47541803 - 47541925
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggtcttg 168  Q
    ||||||||||||||  |||||||||||||||| ||||| ||||||||| ||||| ||||||||||  ||||||| | |||| |||||||||||| |||||    
T  47541803 ttttttaataataagaaggaaattgataaaaaagatgattgaatattttgaggaaaatctttttatgtgtgtgtgtccaaatattattgatttgatcttg 47541902  T
Q  169 tgaccatggaagaatatctcctt 191  Q
    ||| |||| ||||||||||||||    
T  47541903 tgatcatgaaagaatatctcctt 47541925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 61 - 184
Target Start/End: Original strand, 52920071 - 52920197
Alignment:
Q  61 taaagaagtattttttaataataaagaggaaattgataaaaatga-tgactgaatatttagaggagaatctttttatgtgt--gtattcaaacattattg 157  Q
    |||||||||||||||||||||||||||| |||||||||||||  | ||| |||||||||  | |  ||||||||||| | |  ||||| |||||||||||    
T  52920071 taaagaagtattttttaataataaagagaaaattgataaaaaaaaatgattgaatatttttaagtaaatctttttatttatatgtatttaaacattattg 52920170  T
Q  158 atttggtcttgtgaccatggaagaata 184  Q
    |||||||||||||||||||||||||||    
T  52920171 atttggtcttgtgaccatggaagaata 52920197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 185
Target Start/End: Original strand, 36364861 - 36364972
Alignment:
Q  70 attttttaataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgt 169  Q
    ||||||||||| ||||||| |||||||||||||| ||||    ||||||  ||||  || ||||||| ||||| | |||||||||||||||||||||||     
T  36364861 attttttaatagtaaagagaaaattgataaaaataatga----atattttaaggaccatatttttatatgtgtgtccaaacattattgatttggtcttgc 36364956  T
Q  170 gaccatggaagaatat 185  Q
    ||||||| || |||||    
T  36364957 gaccatgcaacaatat 36364972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 73 - 175
Target Start/End: Complemental strand, 47833607 - 47833504
Alignment:
Q  73 ttttaataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgtgtgta--ttcaaacattattgatttggtcttgtg 170  Q
    ||||||||||||||||||||||||| ||||| |||| ||||||||| |||||   ||||||||||||||||  | ||| || ||| |||||||||||| |    
T  47833607 ttttaataataaagaggaaattgat-aaaataatgattgaatattttgaggatggtctttttatgtgtgtatgtccaaccactatagatttggtcttgcg 47833509  T
Q  171 accat 175  Q
    |||||    
T  47833508 accat 47833504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 15827158 - 15827229
Alignment:
Q  110 tgaatatttagaggagaatctttttatgtg--tgtattcaaacattattgatttggtcttgtgaccatggaa 179  Q
    ||||||||| ||  ||||||||||||||||  |||||||||| |||||||||| ||||||||||||||||||    
T  15827158 tgaatattttgacaagaatctttttatgtgtgtgtattcaaatattattgattcggtcttgtgaccatggaa 15827229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 39503498 - 39503615
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaatgatgac--tgaatatttagaggagaatctttttatgtgt--gtattcaaacattattgatttggtct 166  Q
    ||||||||||||||||||||||||||||||||  |  |   | |||||||  | ||  ||||||||||||||  || |||||||| ||||||||| ||||    
T  39503498 ttttttaataataaagaggaaattgataaaaaaaaaaaaattaaatattttaaagatcatctttttatgtgtatgtgttcaaacactattgatttagtct 39503597  T
Q  167 tgtgaccatggaagaata 184  Q
    ||||||||| ||||||||    
T  39503598 tgtgaccatagaagaata 39503615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 20679835 - 20679951
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttt---tatgtgtgtattcaaacattattgatttggtctt 167  Q
    ||||||||||||||||||||||||||||||||  || | |||||||||  | ||  || ||||   | ||||||| | |||||| |||||||||| ||||    
T  20679835 ttttttaataataaagaggaaattgataaaaaaaataattgaatattttaaagaccattttttttatgtgtgtgtgtccaaacactattgatttgatctt 20679934  T
Q  168 gtgaccatggaagaata 184  Q
    | ||||||| |||||||    
T  20679935 gagaccatgaaagaata 20679951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 172
Target Start/End: Complemental strand, 46381590 - 46381481
Alignment:
Q  66 aagtattttttaataataaaga-ggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgtgtgtat--tcaaacattattgatttg 162  Q
    ||||||||||||||| |||| | |||||||||||||||  |||| ||||| |||  |||| ||||| ||||||| ||| |  ||||||| |||| |||||    
T  46381590 aagtattttttaatagtaaaaaaggaaattgataaaaaaaatgattgaatgtttttaggataatctctttatgtatgtgtgctcaaacactatttatttg 46381491  T
Q  163 gtcttgtgac 172  Q
    ||||||||||    
T  46381490 gtcttgtgac 46381481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 149
Target Start/End: Complemental strand, 42970049 - 42969971
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgtgtgtattcaaa 149  Q
    |||||||||||||||||  |||||||||||||  | || |||||||||  |||| |||||||||||  |||| ||||||    
T  42970049 ttttttaataataaagataaaattgataaaaaaaaagattgaatattttaaggataatctttttatacgtgtgttcaaa 42969971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 71 - 184
Target Start/End: Complemental strand, 44880367 - 44880254
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtg 170  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  44880367 ttttttaataataaggaggaaattgataaaaaagatgactgaatattttgaggagaatcgttttatgtgtgtgttcaaacattattgatttggtcttgtg 44880268  T
Q  171 accatggaagaata 184  Q
    |||||| |||||||    
T  44880267 accatgaaagaata 44880254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 74 - 188
Target Start/End: Original strand, 1994847 - 1994961
Alignment:
Q  74 tttaataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgacc 173  Q
    |||||||||||||||| |||||||||||| ||||| |||||||||  |||||||||||||| ||||| | | ||||||||||||||||||||||||||||    
T  1994847 tttaataataaagaggtaattgataaaaaagatgattgaatattttcaggagaatctttttgtgtgtttgtccaaacattattgatttggtcttgtgacc 1994946  T
Q  174 atggaagaatatctc 188  Q
    || | ||||||||||    
T  1994947 atagtagaatatctc 1994961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 71 - 184
Target Start/End: Complemental strand, 22220324 - 22220210
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaat-gatgactgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgt 169  Q
    |||||||||||||| |||||||||||||||||  ||||| ||||||||| ||| ||||||||||||||||||| | ||||||||||||||||| |||| |    
T  22220324 ttttttaataataaggaggaaattgataaaaaaagatgattgaatattttgagaagaatctttttatgtgtgtgtacaaacattattgatttgatctttt 22220225  T
Q  170 gaccatggaagaata 184  Q
    |||||||||||||||    
T  22220224 gaccatggaagaata 22220210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 61 - 189
Target Start/End: Original strand, 22831157 - 22831286
Alignment:
Q  61 taaagaagtatttt-ttaataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgtgtgtattcaaacattattgat 159  Q
    |||||||||||||| |||||||||| ||||||| ||||||||| ||||| ||||||||| ||| ||||||||| ||||||||| | |||| |||||||||    
T  22831157 taaagaagtatttttttaataataaggaggaaagtgataaaaaagatgattgaatattttgagaagaatctttatatgtgtgtgtccaaatattattgat 22831256  T
Q  160 ttggtcttgtgaccatggaagaatatctcc 189  Q
    || ||||||||||||  |||||||||||||    
T  22831257 ttagtcttgtgaccagagaagaatatctcc 22831286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 71 - 183
Target Start/End: Complemental strand, 2008514 - 2008400
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttt--tatgtgtgtattcaaacattattgatttggtcttg 168  Q
    |||||||||||||| ||| ||||||||||||| ||||| ||||||||| ||||||||||||||  ||||||||| | |||| ||||||||||||||||||    
T  2008514 ttttttaataataaggagaaaattgataaaaaagatgattgaatattttgaggagaatctttttatatgtgtgtgtccaaatattattgatttggtcttg 2008415  T
Q  169 tgaccatggaagaat 183  Q
    ||| |||||||||||    
T  2008414 tgatcatggaagaat 2008400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 39056869 - 39056981
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtg 170  Q
    |||||||||| ||| ||| |||| |||||||| ||||| ||||||||| ||||| ||||||||||||||||| | |||||||||| |||||||||||| |    
T  39056869 ttttttaatattaaggagaaaatcgataaaaa-gatgattgaatattttgaggaaaatctttttatgtgtgtgtccaaacattatagatttggtcttgcg 39056967  T
Q  171 accatggaagaata 184  Q
    | ||||||||||||    
T  39056968 atcatggaagaata 39056981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 61 - 184
Target Start/End: Original strand, 26466312 - 26466438
Alignment:
Q  61 taaagaagtattttttaataataaagaggaaattgataaaaatgatgac---tgaatatttagaggagaatctttttatgtgtgtattcaaacattattg 157  Q
    |||||||||||||||||||||||| ||| ||||||||| |||  |  ||   |||||||||  |  ||||||||||||| | ||| |||||||||||||     
T  26466312 taaagaagtattttttaataataaggagaaaattgatataaaaaaaaacaattgaatattttaaaaagaatctttttatatatgtgttcaaacattatta 26466411  T
Q  158 atttggtcttgtgaccatggaagaata 184  Q
    ||||| |||||||||||||||||||||    
T  26466412 atttgatcttgtgaccatggaagaata 26466438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 14785052 - 14785011
Alignment:
Q  61 taaagaagtattttttaataataaagaggaaattgataaaaa 102  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  14785052 taaagaagtattttttaataataaaaaggaaattgataaaaa 14785011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 164
Target Start/End: Complemental strand, 28297788 - 28297695
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggt 164  Q
    |||||||||||||||||||||||||||||||   ||||  |||||| |  |||||||||||||||| | | | | ||||| |||||||||||||    
T  28297788 ttttttaataataaagaggaaattgataaaagaaatgatcgaatatgttaaggagaatctttttatatatatgtccaaactttattgatttggt 28297695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 45805583 - 45805640
Alignment:
Q  127 atctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 184  Q
    |||||||||||||||| | |||||| |||||||||| |||||| | ||||||||||||    
T  45805583 atctttttatgtgtgtgtgcaaacactattgatttgatcttgtaatcatggaagaata 45805640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 47169368 - 47169336
Alignment:
Q  70 attttttaataataaagaggaaattgataaaaa 102  Q
    |||||||||||||||||||||||||||||||||    
T  47169368 attttttaataataaagaggaaattgataaaaa 47169336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 71 - 184
Target Start/End: Complemental strand, 16253142 - 16253029
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtg 170  Q
    |||||||||||||| ||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  16253142 ttttttaataataaggaggaaattgataaaaaagatgattgaatattttgaggagaatctttttatgtgtgtctccaaacattattgatttggtcttgtg 16253043  T
Q  171 accatggaagaata 184  Q
    | ||||||||||||    
T  16253042 aacatggaagaata 16253029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 71 - 184
Target Start/End: Complemental strand, 24241591 - 24241478
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtg 170  Q
    |||||||||||||| ||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||| | |||||||||||||||||||| ||||    
T  24241591 ttttttaataataaggaggaaattgataaaaaagatgattgaatattttgaggagaatctttttatgtgtgtgtccaaacattattgatttggtcatgtg 24241492  T
Q  171 accatggaagaata 184  Q
    ||||||||||||||    
T  24241491 accatggaagaata 24241478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 61 - 184
Target Start/End: Complemental strand, 41942905 - 41942781
Alignment:
Q  61 taaagaagtatttttt-aataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgtgtgtattcaaacattattgat 159  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||| || |||||||||||||||| ||| | ||||||||||||||    
T  41942905 taaagaagtatttttttaataataaggaggaaattgataaaaatgatgattgaatatttcgaagagaatctttttatgtatgtgtccaaacattattgat 41942806  T
Q  160 ttggtcttgtgaccatggaagaata 184  Q
    ||||||||||||||||| |||||||    
T  41942805 ttggtcttgtgaccatgaaagaata 41942781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 71 - 184
Target Start/End: Complemental strand, 21356907 - 21356794
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtg 170  Q
    |||||||||||||| ||| ||||||||||||| ||||| ||||||||| || |||||||||||||| ||||| | |||||||||||||||||||||||||    
T  21356907 ttttttaataataatgagaaaattgataaaaaagatgattgaatattttgaagagaatctttttatatgtgtgtccaaacattattgatttggtcttgtg 21356808  T
Q  171 accatggaagaata 184  Q
    |||||  |||||||    
T  21356807 accataaaagaata 21356794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 34773414 - 34773528
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgtgtgta--ttcaaacattattgatttggtcttg 168  Q
    ||||||||||||||| |||||||| |||||||  |||| ||||||||| ||||||||||||||||||||||||  | ||||||||||||| |||||||||    
T  34773414 ttttttaataataaa-aggaaattaataaaaaatatgattgaatattttgaggagaatctttttatgtgtgtatgtgcaaacattattgagttggtcttg 34773512  T
Q  169 tgaccatggaagaata 184  Q
    ||| ||||||||||||    
T  34773513 tgatcatggaagaata 34773528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 63 - 184
Target Start/End: Original strand, 39744154 - 39744276
Alignment:
Q  63 aagaagta-ttttttaataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgtgtgtattcaaacattattgattt 161  Q
    |||||||| |||||||||||||| ||||||| |||||||||  |||| ||| ||||  ||| ||||||||||||| ||||| | ||||||||||||||||    
T  39744154 aagaagtacttttttaataataaggaggaaaatgataaaaaaaatgattgactattctgagaagaatctttttatatgtgtgtccaaacattattgattt 39744253  T
Q  162 ggtcttgtgaccatggaagaata 184  Q
    |||||||||||||| ||||||||    
T  39744254 ggtcttgtgaccatagaagaata 39744276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 71 - 184
Target Start/End: Complemental strand, 2345083 - 2344969
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgtgtg--tattcaaacattattgatttggtcttg 168  Q
    ||||||||||| || ||||||||||||||||| ||||| ||||| |||  | || ||| ||||||||||||  ||| |||||||||||||||||||||||    
T  2345083 ttttttaataagaaggaggaaattgataaaaaagatgattgaattttttaaagaaaat-tttttatgtgtgcttatccaaacattattgatttggtcttg 2344985  T
Q  169 tgaccatggaagaata 184  Q
    |||||| |||||||||    
T  2344984 tgaccaaggaagaata 2344969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 86 - 190
Target Start/End: Original strand, 38746028 - 38746133
Alignment:
Q  86 gaggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgtgtgtat-tcaaacattattgatttggtcttgtgaccatggaagaata 184  Q
    ||||||||||| || || ||||| ||||||||| ||||||||||| |||||| |||| | || || |||||||||||||||||||||| ||||||||||     
T  38746028 gaggaaattgaaaacaaagatgattgaatattttgaggagaatctatttatgggtgtgtgtccaaaattattgatttggtcttgtgacgatggaagaatg 38746127  T
Q  185 tctcct 190  Q
    ||||||    
T  38746128 tctcct 38746133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 184
Target Start/End: Complemental strand, 48503992 - 48503922
Alignment:
Q  114 tatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 184  Q
    ||||| || ||||||| |||||| ||||| | |||| ||||||||||||||||| ||| ||||||||||||    
T  48503992 tattttgatgagaatccttttatatgtgtgtccaaatattattgatttggtcttatgaacatggaagaata 48503922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 184
Target Start/End: Original strand, 7101359 - 7101464
Alignment:
Q  82 taaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgtgtgtat----tcaaacattattgatttggtcttgtgaccatgg 177  Q
    ||||||||||||||||||||   |||| |||||||||  ||||  |||||||||||||||| |    || |||| ||||||||||||||| ||| |||||    
T  7101359 taaagaggaaattgataaaaga-atgattgaatattttaaggaccatctttttatgtgtgtgtatgttccaacactattgatttggtcttatgatcatgg 7101457  T
Q  178 aagaata 184  Q
     ||||||    
T  7101458 gagaata 7101464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 142
Target Start/End: Complemental strand, 8971543 - 8971471
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaatga-tgactgaatatttagaggagaatctttttatgtgtgt 142  Q
    |||||||||||||| |||||| ||||||||||  | ||| | ||||||| ||||||||| ||||||| |||||    
T  8971543 ttttttaataataaggaggaacttgataaaaaaaattgattaaatattttgaggagaatatttttatatgtgt 8971471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 61 - 188
Target Start/End: Complemental strand, 42056803 - 42056676
Alignment:
Q  61 taaagaagtattttttaataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatt 160  Q
    ||||||| |||||||||||||||| ||| ||||||||||||| ||||| |||||||||  | |||||||||||||||| ||| | |||||||||||||||    
T  42056803 taaagaaatattttttaataataaggagaaaattgataaaaaagatgattgaatattttaaagagaatctttttatgtttgtgtccaaacattattgatt 42056704  T
Q  161 tggtcttgtgaccatggaagaatatctc 188  Q
    ||||||||||||||||||||||||||||    
T  42056703 tggtcttgtgaccatggaagaatatctc 42056676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 71 - 196
Target Start/End: Complemental strand, 30208313 - 30208187
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgtgt--gtattcaaacattattgatttggtcttg 168  Q
    |||||||||||||| ||||||||||||||||| ||||| ||||||||| ||||||||||||||||||| |  || | ||||||||||||||||||||||     
T  30208313 ttttttaataataaggaggaaattgataaaaaagatgattgaatattt-gaggagaatctttttatgtatatgtgtccaaacattattgatttggtctta 30208215  T
Q  169 tgaccatggaagaatatctccttattct 196  Q
    |||||||||||||||| |||| ||||||    
T  30208214 tgaccatggaagaatacctccatattct 30208187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 61 - 189
Target Start/End: Complemental strand, 5594908 - 5594779
Alignment:
Q  61 taaagaagtatttttt-aataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgtgtgtattcaaacattattgat 159  Q
    |||||||||||||||| |||||||| ||||||| ||||||||| ||||| ||||||||| ||| ||||||||| ||||||||| | |||| |||||||||    
T  5594908 taaagaagtatttttttaataataaggaggaaagtgataaaaaagatgattgaatattttgagaagaatctttatatgtgtgtgtccaaatattattgat 5594809  T
Q  160 ttggtcttgtgaccatggaagaatatctcc 189  Q
    || ||||||||||||  |||||||||||||    
T  5594808 ttagtcttgtgaccagagaagaatatctcc 5594779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 71 - 188
Target Start/End: Original strand, 39402020 - 39402140
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaat-gatgactgaatatttagaggagaatctttttatgtgtgtat--tcaaacattattgatttggtctt 167  Q
    ||||||||||||||  | ||||||||||||||  ||||| ||||||||| ||||||||||||||||||| |||||  ||||| |||||||||||||||||    
T  39402020 ttttttaataataagaaagaaattgataaaaaaagatgattgaatattttgaggagaatctttttatgtatgtatgttcaaatattattgatttggtctt 39402119  T
Q  168 gtgaccatggaagaatatctc 188  Q
    |||||||||||||||||||||    
T  39402120 gtgaccatggaagaatatctc 39402140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 71 - 183
Target Start/End: Original strand, 1162111 - 1162222
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtg 170  Q
    ||||||||||||||||||||||||||||| || ||  | ||||||||| |||||||||| |||||||||||| |||||| |||| |||||||||||||||    
T  1162111 ttttttaataataaagaggaaattgataagaaagac-attgaatattttgaggagaatccttttatgtgtgtgttcaaatattactgatttggtcttgtg 1162209  T
Q  171 accatggaagaat 183  Q
    | |||||| ||||    
T  1162210 atcatggacgaat 1162222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 61 - 184
Target Start/End: Original strand, 40719878 - 40720005
Alignment:
Q  61 taaagaagtattttttaa-taataaagaggaaattgataaaaat-gatgactgaatatttagaggagaatcttttta--tgtgtgtattcaaacattatt 156  Q
    |||||||||||||||||| |||||| |||||||||||||||||  ||||| ||||||||| ||||||||||||||||  ||||||| | |||||||||||    
T  40719878 taaagaagtattttttaaataataaggaggaaattgataaaaaaagatgattgaatattttgaggagaatctttttatgtgtgtgtgtccaaacattatt 40719977  T
Q  157 gatttggtcttgtgaccatggaagaata 184  Q
     ||||  |||| ||||||||||||||||    
T  40719978 aatttaatcttttgaccatggaagaata 40720005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 61 - 189
Target Start/End: Complemental strand, 35179285 - 35179155
Alignment:
Q  61 taaagaagtatttttt-aataataaagaggaaattgataaaaatga-tgactgaatatttagaggagaatctttttatgtgtgtattcaaacattattga 158  Q
    |||||||||||||||| ||||||||  ||||||||||||||||  | | | ||||||||| ||| ||||||||||||| ||||| | |||||||||||||    
T  35179285 taaagaagtatttttttaataataagaaggaaattgataaaaaaaaattattgaatattttgagaagaatctttttatatgtgtgtccaaacattattga 35179186  T
Q  159 tttggtcttgtgaccatggaagaatatctcc 189  Q
    ||||||||| |||||||| ||||||| ||||    
T  35179185 tttggtcttatgaccatgaaagaatacctcc 35179155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 31333156 - 31333273
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggtcttg 168  Q
    |||||||||||||| ||| ||| ||||||||| ||||| |||||||||  || | ||||||||||  ||||||||  |||||||| ||||||||||||||    
T  31333156 ttttttaataataaggagaaaactgataaaaaagatgattgaatattttaagtaaaatctttttatgtgtgtgtaaccaaacatt-ttgatttggtcttg 31333254  T
Q  169 tgaccatggaagaatatct 187  Q
    |||| ||||||||||||||    
T  31333255 tgactatggaagaatatct 31333273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 42921480 - 42921385
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtct 166  Q
    |||||||||||||| || |||||||||||||| ||||| ||| ||||| ||| ||||||||||||| | ||| ||||||||||||| |||||||||    
T  42921480 ttttttaataataaggatgaaattgataaaaaagatgattgattattttgagaagaatctttttatatttgtgttcaaacattattaatttggtct 42921385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 140
Target Start/End: Original strand, 30362012 - 30362082
Alignment:
Q  71 ttttttaataataaagaggaaattgat-aaaaatgatgactgaatatttagaggagaatctttttatgtgt 140  Q
    |||||||||||||| || ||||||||| |||||| || | ||||||||| ||||||||| |||||||||||    
T  30362012 ttttttaataataaggacgaaattgataaaaaataataattgaatattttgaggagaatttttttatgtgt 30362082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 184
Target Start/End: Complemental strand, 36132788 - 36132676
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtg 170  Q
    |||||||||||||| ||||||||| |||||||  |||| | |||||||  |  |  |||||||||||||||||| |||| | |||| |||| ||||||||    
T  36132788 ttttttaataataa-gaggaaattaataaaaaaaatgattaaatattttaaaaaccatctttttatgtgtgtatccaaatactattaatttagtcttgtg 36132690  T
Q  171 accatggaagaata 184  Q
    || || ||||||||    
T  36132689 actatagaagaata 36132676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 7e-39; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 61 - 188
Target Start/End: Complemental strand, 8541556 - 8541427
Alignment:
Q  61 taaagaagtatttttt-aataataaagaggaaattgataaaaa-tgatgactgaatatttagaggagaatctttttatgtgtgtattcaaacattattga 158  Q
    |||||||||||||||| |||||||| ||||||||||||||||| | |||| ||||||||| |||||||||||||||| |||||| |||||||||||||||    
T  8541556 taaagaagtatttttttaataataaggaggaaattgataaaaaataatgattgaatattttgaggagaatctttttacgtgtgtgttcaaacattattga 8541457  T
Q  159 tttggtcttgtgaccatggaagaatatctc 188  Q
    |||||||||||||||||  |||||||||||    
T  8541456 tttggtcttgtgaccataaaagaatatctc 8541427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 71 - 184
Target Start/End: Complemental strand, 34998643 - 34998528
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttt--tatgtgtgtattcaaacattattgatttggtcttg 168  Q
    |||||||||||||| ||| |||||||||||||| |||| ||||||||| ||||||||||||||  ||||||||| | |||||||||||||||||||||||    
T  34998643 ttttttaataataaggagaaaattgataaaaataatgattgaatattttgaggagaatctttttatatgtgtgtgtccaaacattattgatttggtcttg 34998544  T
Q  169 tgaccatggaagaata 184  Q
    ||||||||||||||||    
T  34998543 tgaccatggaagaata 34998528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 184
Target Start/End: Complemental strand, 10545118 - 10544991
Alignment:
Q  61 taaagaagta--ttttttaataataaagaggaaattgataaa--aatgatgactgaatatttagaggagaatctttttatgtgtgtattcaaacattatt 156  Q
    ||||||||||  ||||||||||||||||||||||||||||||  ||  |||| |||||||||  |  | ||||||||||||||||| | |||| | ||||    
T  10545118 taaagaagtactttttttaataataaagaggaaattgataaataaaaaatgattgaatattttaaaaataatctttttatgtgtgtctccaaatactatt 10545019  T
Q  157 gatttggtcttgtgaccatggaagaata 184  Q
    |||| |||||||||| | ||||||||||    
T  10545018 gattcggtcttgtgatcgtggaagaata 10544991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 184
Target Start/End: Original strand, 39187948 - 39188065
Alignment:
Q  69 tattttttaataataaagaggaaattgataaaaatga---tgactgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtc 165  Q
    |||||||||||||||| | |||||||||||||||  |   ||| |||||||||  ||||  ||||||||||| |||| | |||| | |||||||||||||    
T  39187948 tattttttaataataa-gtggaaattgataaaaaaaaaaatgattgaatattttaaggaccatctttttatgcgtgtgtccaaatactattgatttggtc 39188046  T
Q  166 ttgtgaccatggaagaata 184  Q
    || ||||||||||||||||    
T  39188047 ttctgaccatggaagaata 39188065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 45627408 - 45627524
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatcttttt-atgtgtgtat-tcaaa-cattattgatttggtctt 167  Q
    ||||||||||||| | ||||||||||||||||  |||| | |||||||  |||| ||| ||||| |||||||| | ||||| || ||||||||||||| |    
T  45627408 ttttttaataatataaaggaaattgataaaaaaaatgattaaatattttaaggacaattttttttatgtgtgtgtgtcaaaacactattgatttggtcct 45627507  T
Q  168 gtgaccatggaagaata 184  Q
    |||||||||||||||||    
T  45627508 gtgaccatggaagaata 45627524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 32676852 - 32676800
Alignment:
Q  127 atctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaa 179  Q
    |||||||||  ||||||| |||||| |||||||||||||||||||||||||||    
T  32676852 atctttttacatgtgtatccaaacactattgatttggtcttgtgaccatggaa 32676800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 15878797 - 15878853
Alignment:
Q  138 tgtgtattcaaacattattgatttggtcttgtgaccatggaagaatatctccttatt 194  Q
    ||||||| |||||  |||||||||||||||||||| || |||||||||||| |||||    
T  15878797 tgtgtatccaaacgctattgatttggtcttgtgacaatagaagaatatctctttatt 15878853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 40076687 - 40076753
Alignment:
Q  71 ttttttaataataaagaggaaattgat-aaaaatgatgactgaatatttagaggagaatctttttat 136  Q
    |||||||||||||| |||||||||||| ||||| ||||| |||||||||  |  |||||||||||||    
T  40076687 ttttttaataataaggaggaaattgataaaaaaagatgattgaatatttttaaaagaatctttttat 40076753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 61 - 184
Target Start/End: Complemental strand, 33758918 - 33758794
Alignment:
Q  61 taaagaagtattttttaa-taataaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgtgtgtattcaaacattattgat 159  Q
    |||||||||||||||||| ||||||| |||||||||||||||| ||||| |||||| || ||||||||||||||||||||||| | |||||| |||||||    
T  33758918 taaagaagtattttttaaataataaaaaggaaattgataaaaaagatgattgaatagtttgaggagaatctttttatgtgtgtgtccaaacagtattgat 33758819  T
Q  160 ttggtcttgtgaccatggaagaata 184  Q
    ||| |||||||||||||||||||||    
T  33758818 ttgatcttgtgaccatggaagaata 33758794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 83 - 165
Target Start/End: Original strand, 23151436 - 23151518
Alignment:
Q  83 aaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtc 165  Q
    ||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||    
T  23151436 aaagaagaaattgataaaaatgatgattgaatattttgaggagaatctttttatgtgtgtgtccaaacattattgatttggtc 23151518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 71 - 189
Target Start/End: Original strand, 2976440 - 2976556
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtg 170  Q
    |||||||||| |||||| ||||||||||||||  |||| |||||||||  ||||  |||||||||||||||  | |||||| ||||||||||||||| ||    
T  2976440 ttttttaatattaaagaagaaattgataaaaaaaatgattgaatattttaaggaccatctttttatgtgtg--tccaaacactattgatttggtcttatg 2976537  T
Q  171 accatggaagaatatctcc 189  Q
    |||||||||||||| ||||    
T  2976538 accatggaagaatacctcc 2976556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 68 - 174
Target Start/End: Complemental strand, 30319924 - 30319817
Alignment:
Q  68 gtattttttaataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgt--gtgtattcaaacattattgatttggtc 165  Q
    |||||||||||||| || ||||||||||||||||| ||||| |||||||||  | |||||| |||||||||  | |||| ||||||||||||||||||||    
T  30319924 gtattttttaataagaaggaggaaattgataaaaaagatgattgaatattttaaagagaat-tttttatgtgcgcgtatccaaacattattgatttggtc 30319826  T
Q  166 ttgtgacca 174  Q
    |||||||||    
T  30319825 ttgtgacca 30319817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 34849556 - 34849451
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaat-gatgactgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgt 169  Q
    |||||||||||||| ||| |||||||||||||  ||||| ||||||||| ||||||||||||||||| ||||| |  ||||||||||||||| ||||| |    
T  34849556 ttttttaataataaggagaaaattgataaaaaaagatgattgaatattttgaggagaatctttttatatgtgtgtcgaaacattattgatttcgtcttat 34849457  T
Q  170 gaccat 175  Q
    ||||||    
T  34849456 gaccat 34849451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 20524598 - 20524711
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtg 170  Q
    ||||||||||||||||||||||||||||||||  |||| |||||||||  |  |  ||||||| |||||||| | |||||| ||||||||| || |||||    
T  20524598 ttttttaataataaagaggaaattgataaaaaaaatgattgaatattttaaacatcatcttttgatgtgtgtgtccaaacagtattgatttagttttgtg 20524697  T
Q  171 accatggaagaata 184  Q
    | ||||||||||||    
T  20524698 atcatggaagaata 20524711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 71 - 184
Target Start/End: Complemental strand, 10719860 - 10719746
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaatga-tgactgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgt 169  Q
    |||||||||| ||||||| |||||||||||||  | ||| |||||||||  ||||  || ||||||||||||| | |||||| |||| |||||||||| |    
T  10719860 ttttttaatagtaaagagaaaattgataaaaaaaaatgattgaatattttaaggaccatttttttatgtgtgtgtccaaacactattaatttggtcttat 10719761  T
Q  170 gaccatggaagaata 184  Q
    |||||||||||||||    
T  10719760 gaccatggaagaata 10719746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 72 - 164
Target Start/End: Original strand, 37872196 - 37872291
Alignment:
Q  72 tttttaataataaagaggaaattgataaaaat-gatgactgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggt 164  Q
    ||||||||||||| |||||||||||||||||  ||||| ||||||||| || |||||||||||||  ||||||| | |||| ||||||||||||||    
T  37872196 tttttaataataaggaggaaattgataaaaaaagatgattgaatattttgatgagaatctttttatgtgtgtgtgtccaaatattattgatttggt 37872291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 37872302 - 37872342
Alignment:
Q  147 aaacattattgatttggtcttgtgaccatggaagaatatct 187  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  37872302 aaacattattgatttggtcttgtgaccatggaagaatatct 37872342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 176
Target Start/End: Complemental strand, 3454364 - 3454259
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtg 170  Q
    ||||||||||||||| | |||||||||||||| ||||| |||||||||  || ||||||||| ||| | |||    ||| |||||||||||| ||||||     
T  3454364 ttttttaataataaaaaagaaattgataaaaaagatgattgaatattttaagaagaatctttatatatttgtgactaaatattattgatttgatcttgta 3454265  T
Q  171 accatg 176  Q
    ||||||    
T  3454264 accatg 3454259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 42285283 - 42285218
Alignment:
Q  71 ttttttaataataaagaggaaattgata-aaaatgatgactgaatatttagaggagaatcttttta 135  Q
    |||||||||||||| ||||||||||||| ||||  |||| ||||||||| ||||||||||||||||    
T  42285283 ttttttaataataaggaggaaattgataaaaaaaaatgattgaatattttgaggagaatcttttta 42285218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 191
Target Start/End: Complemental strand, 8026593 - 8026460
Alignment:
Q  63 aagaagtattttttaataataaagaggaaattgata---aaaatgatgactgaatatttagaggagaatctttttatgtgtgta--ttcaaacattattg 157  Q
    ||||| ||| ||||| ||||||||||||||||||||   ||||  |||| |||||||||  | ||  |||||||||||||| |   | |||||| |||||    
T  8026593 aagaaatatattttagtaataaagaggaaattgatataaaaaaaaatgattgaatattttaaagaccatctttttatgtgtatgcgtccaaacagtattg 8026494  T
Q  158 atttggtcttgtgaccatggaagaatatctcctt 191  Q
    ||||||||||||||| || |||||||| ||||||    
T  8026493 atttggtcttgtgactatagaagaatacctcctt 8026460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 102
Target Start/End: Complemental strand, 36442638 - 36442607
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaa 102  Q
    ||||||||||||||||||||||||||||||||    
T  36442638 ttttttaataataaagaggaaattgataaaaa 36442607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 71 - 184
Target Start/End: Complemental strand, 3870141 - 3870024
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatcttttta----tgtgtgtattcaaacattattgatttggtct 166  Q
    |||||||||||||| ||||||||||||||||| ||||| ||||||||| ||||||||||||||||    ||||||| |  ||||||||||||||||||||    
T  3870141 ttttttaataataaggaggaaattgataaaaaagatgattgaatattttgaggagaatctttttatgtctgtgtgtgtcaaaacattattgatttggtct 3870042  T
Q  167 tgtgaccatggaagaata 184  Q
    ||||||||||||||||||    
T  3870041 tgtgaccatggaagaata 3870024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 73 - 184
Target Start/End: Complemental strand, 11028891 - 11028779
Alignment:
Q  73 ttttaataataaagaggaaattgataaaaat-gatgactgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtga 171  Q
    |||||||||||| |||||||||||||||||  ||||| |||||||||  |||||||||||||||||||||| | |||||||||||||||||||||| |||    
T  11028891 ttttaataataaggaggaaattgataaaaaaagatgattgaatattttaaggagaatctttttatgtgtgtgtccaaacattattgatttggtcttttga 11028792  T
Q  172 ccatggaagaata 184  Q
    | |||||||||||    
T  11028791 cgatggaagaata 11028779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 61 - 184
Target Start/End: Complemental strand, 36400981 - 36400857
Alignment:
Q  61 taaagaagtattttttaataataa-agaggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgtgtgtat--tcaaacattattg 157  Q
    ||||||||||||||||  |||||| ||||  |||||||||||| ||||| ||||||||| ||||||||||||||||||||||| |  |||||||||||||    
T  36400981 taaagaagtatttttt--taataatagagacaattgataaaaaagatgattgaatattttgaggagaatctttttatgtgtgtgtgttcaaacattattg 36400884  T
Q  158 atttggtcttgtgaccatggaagaata 184  Q
    ||||||||||| |||||||||||||||    
T  36400883 atttggtcttgagaccatggaagaata 36400857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 61 - 184
Target Start/End: Complemental strand, 38879642 - 38879517
Alignment:
Q  61 taaagaagtatttttt-aataataaagaggaaattgataaaaat-gatgactgaatatttagaggagaatctttttatgtgtgtattcaaacattattga 158  Q
    |||||||||||||||| |||||| | ||| |||||||||||||  ||||| | ||||||| ||||||||||||||||||||||| | ||||||||||| |    
T  38879642 taaagaagtatttttttaataatgaggagaaaattgataaaaaaagatgatttaatattttgaggagaatctttttatgtgtgtgtccaaacattattaa 38879543  T
Q  159 tttggtcttgtgaccatggaagaata 184  Q
    |||||||||||||| |||||||||||    
T  38879542 tttggtcttgtgactatggaagaata 38879517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 76 - 190
Target Start/End: Original strand, 28734069 - 28734183
Alignment:
Q  76 taataataaagaggaaattgataaaaat-gatgactgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgacca 174  Q
    |||||||||||| ||||||||||||||  ||||| ||| ||||| ||||||||| ||||||||||||| | ||||||||||||||||||||||||||||     
T  28734069 taataataaagaagaaattgataaaaaaagatgagtgagtattttgaggagaat-tttttatgtgtgtgtccaaacattattgatttggtcttgtgaccg 28734167  T
Q  175 tggaagaatatctcct 190  Q
    |||||||||| |||||    
T  28734168 tggaagaatacctcct 28734183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 71 - 184
Target Start/End: Complemental strand, 37721563 - 37721449
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaatga-tgactgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgt 169  Q
    |||||||||||||| |||||||||||||||||  | ||| ||||||||| || ||||||||||||||| | || | |||| |||||||||||||||||||    
T  37721563 ttttttaataataaggaggaaattgataaaaaaaaatgattgaatattttgaagagaatctttttatgcgcgtgtccaaatattattgatttggtcttgt 37721464  T
Q  170 gaccatggaagaata 184  Q
    |||||||||||||||    
T  37721463 gaccatggaagaata 37721449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 71 - 184
Target Start/End: Complemental strand, 3647532 - 3647418
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgtgt--gtattcaaacattattgatttggtcttg 168  Q
    ||||||||||| || ||| ||||||||||||| ||||| |||||||||  | |||||| |||||||||||  || |||||||||||||||||||||||||    
T  3647532 ttttttaataagaaggagaaaattgataaaaaagatgattgaatattttaaagagaat-tttttatgtgttcgtgttcaaacattattgatttggtcttg 3647434  T
Q  169 tgaccatggaagaata 184  Q
    |||||| |||||||||    
T  3647433 tgaccaaggaagaata 3647418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 183
Target Start/End: Original strand, 30706143 - 30706258
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaatga-----tgactgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtc 165  Q
    |||||||||| |||||||||||||||||||||  |     ||| |||||||||  ||||  ||||||||||||||||   |||||| |||||||||||||    
T  30706143 ttttttaatagtaaagaggaaattgataaaaaaaaaaaaatgattgaatattttaaggaccatctttttatgtgtgtc--caaacactattgatttggtc 30706240  T
Q  166 ttgtgaccatggaagaat 183  Q
    ||||||||||| ||||||    
T  30706241 ttgtgaccatgtaagaat 30706258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 6512073 - 6512191
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaatga---tgactgaatattt-agaggagaatctttttatgtgtgtatt--caaacattattgatttggt 164  Q
    ||||||||||||||||||||||||||||||||  |   ||| ||||||||| ||||   | ||||||||||||||| |   |||||| ||||||||||||    
T  6512073 ttttttaataataaagaggaaattgataaaaaaaaaaatgattgaatattttagagttca-tctttttatgtgtgtgtgtccaaacactattgatttggt 6512171  T
Q  165 cttgtgaccatggaagaata 184  Q
    ||||||||||||||| ||||    
T  6512172 cttgtgaccatggaataata 6512191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 3949309 - 3949378
Alignment:
Q  69 tattttttaataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgt 138  Q
    ||||||||||||||||| | ||||||||||||||  |||| ||||||||| ||||||||  |||||||||    
T  3949309 tattttttaataataaaaaagaaattgataaaaaaaatgattgaatattttgaggagaaattttttatgt 3949378  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 34480112 - 34480153
Alignment:
Q  61 taaagaagtattttttaataataaagaggaaattgataaaaa 102  Q
    ||||||| |||||||||||||||| |||||||||||||||||    
T  34480112 taaagaaatattttttaataataaggaggaaattgataaaaa 34480153  T

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Target: scaffold0095 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 71 - 188
Target Start/End: Complemental strand, 35482 - 35362
Alignment:
Q  71 ttttttaataataaagaggaaattgataaaaat-gatgactgaatatttagaggagaatctttttatgtgtgtat--tcaaacattattgatttggtctt 167  Q
    ||||||||||||||  | ||||||||||||||  ||||| ||||||||| ||||||||||||||||||| |||||  ||||| |||||||||||||||||    
T  35482 ttttttaataataagaaagaaattgataaaaaaagatgattgaatattttgaggagaatctttttatgtatgtatgttcaaatattattgatttggtctt 35383  T
Q  168 gtgaccatggaagaatatctc 188  Q
    |||||||||||||||||||||    
T  35382 gtgaccatggaagaatatctc 35362  T

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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 61 - 189
Target Start/End: Complemental strand, 7080279 - 7080148
Alignment:
Q  61 taaagaagtatttttt-aataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgt--gtgtattcaaacattattg 157  Q
    |||||||||||||||| |||| |||||| |||||||||||||| ||| | ||||||||| || ||||||||||||||||  |||| | ||||||||||||    
T  7080279 taaagaagtatttttttaatattaaagacgaaattgataaaaaagattattgaatattttgaagagaatctttttatgtgtgtgtgtccaaacattattg 7080180  T
Q  158 atttggtcttgtgaccatggaagaatatctcc 189  Q
    |||||||| ||||||||| |||||||| ||||    
T  7080179 atttggtcatgtgaccatagaagaatacctcc 7080148  T

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Target: chr6; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 73 - 184
Target Start/End: Original strand, 2141236 - 2141348
Alignment:
Q  73 ttttaataataaagaggaaattgataaaaat-gatgactgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtga 171  Q
    |||||||||||| |||||||||||||||||| ||||| ||||||||| ||| | |||||||||||||| || | ||||| |||||||| || ||||||||    
T  2141236 ttttaataataatgaggaaattgataaaaatagatgattgaatattttgagaaaaatctttttatgtgggtgtccaaacgttattgatatgatcttgtga 2141335  T
Q  172 ccatggaagaata 184  Q
    |||||||||||||    
T  2141336 ccatggaagaata 2141348  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 25336908 - 25337023
Alignment:
Q  71 ttttttaataataaagaggaaa-ttgataaaaatgatgactgaatatttagaggagaatctttttatgtgtg--tattcaaacattattgatttggtctt 167  Q
    ||||||||||| || ||||||| |||||||||| ||||| |||||||||  | |||||| ||||||||||||  | | ||||||||||||||||| ||||    
T  25336908 ttttttaataagaatgaggaaaattgataaaaaagatgattgaatattttaaagagaat-tttttatgtgtgcgtgtccaaacattattgatttgatctt 25337006  T
Q  168 gtgaccatggaagaata 184  Q
    ||||||| |||||||||    
T  25337007 gtgaccaaggaagaata 25337023  T

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Target: scaffold0288 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 18084 - 18163
Alignment:
Q  105 atgactgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 184  Q
    |||| ||||||||| ||||||||||||||| | ||||| ||||||||||||||||| | |||||| ||||||||||||||    
T  18084 atgattgaatattttgaggagaatctttttctatgtgtgttcaaacattattgattggatcttgtaaccatggaagaata 18163  T

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Target: scaffold0009 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 105 - 192
Target Start/End: Complemental strand, 25767 - 25680
Alignment:
Q  105 atgactgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaatatctcctta 192  Q
    |||| ||||||||| || || |||||||||| |||||| | ||||||||||||||||||||| |||| |||||||||||| |||||||    
T  25767 atgattgaatattttgatgaaaatctttttacgtgtgtgtccaaacattattgatttggtctcgtgatcatggaagaatacctcctta 25680  T

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Target: scaffold1339 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 76 - 184
Target Start/End: Original strand, 56 - 165
Alignment:
Q  76 taataataaagaggaaattgataaaaatgatgactgaatatttagaggagaatctttttatgt--gtgtattcaaacattattgatttggtcttgtgacc 173  Q
    |||||||||||| ||||||||||||||  |||| |||||||||  | ||  ||||||||||||  |||| | |||||| ||||||||||||||||||| |    
T  56 taataataaagatgaaattgataaaaaa-atgattgaatatttttaagactatctttttatgtatgtgtgtccaaacactattgatttggtcttgtgatc 154  T
Q  174 atggaagaata 184  Q
    |||||||||||    
T  155 atggaagaata 165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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