View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_343 (Length: 228)
Name: NF8518A_low_343
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_343 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 2 - 227
Target Start/End: Original strand, 32845014 - 32845235
Alignment:
| Q |
2 |
tttccaccctaaccagctagctaatcttgaatttgattgtttaatttgcatataggcaatgaggttgtaaattatgaaaggccacgacccacttcaggga |
101 |
Q |
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| T |
32845014 |
tttccaccctaaccagctagctaattttgaatttgattgttt----tgcacataggcaatgaggttgtaaattatgaaaggccacgacccacttcaggga |
32845109 |
T |
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| Q |
102 |
tccatcgtttcgtgtttgtcttattccgtcaacagtgtagacaaagggtttatgctccaggatggcgacgaaatttcaacacaagagaatttgctgaact |
201 |
Q |
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| T |
32845110 |
tccatcgtttcgtgtttgtcttattccgtcaacagtgtagacaaagggtttatgctccaggatggcgacaaaatttcaacacaagagaatttgctgaact |
32845209 |
T |
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| Q |
202 |
ctacaatcttggatcacctgttgctg |
227 |
Q |
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| T |
32845210 |
ctacaatcttggatcacctgttgctg |
32845235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 53 - 227
Target Start/End: Original strand, 32865563 - 32865737
Alignment:
| Q |
53 |
ataggcaatgaggttgtaaattatgaaaggccacgacccacttcagggatccatcgtttcgtgtttgtcttattccgtcaacagtgtagacaaagggttt |
152 |
Q |
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| T |
32865563 |
ataggtaatgaggttgtaagttatgaaaagccacgacccaatttagggattcatcgtttcgtgtttgtattattgcatcaacagtgtagacaaagagtct |
32865662 |
T |
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| Q |
153 |
atgctccaggatggcgacgaaatttcaacacaagagaatttgctgaactctacaatcttggatcacctgttgctg |
227 |
Q |
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| T |
32865663 |
atgctccgggatggcgacaaaatttcaatacaagagaattcattgaattttacaatcttggatcgccggttgctg |
32865737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 774641 - 774569
Alignment:
| Q |
155 |
gctccaggatggcgacgaaatttcaacacaagagaatttgctgaactctacaatcttggatcacctgttgctg |
227 |
Q |
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| T |
774641 |
gctcctggatggagacaaaatttcattacaagagattttgctgaattttacaatcttggattacctgttgctg |
774569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 814574 - 814502
Alignment:
| Q |
155 |
gctccaggatggcgacgaaatttcaacacaagagaatttgctgaactctacaatcttggatcacctgttgctg |
227 |
Q |
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| T |
814574 |
gctcctggatggagacaaaatttcattacaagagattttgctgaattttacaatcttggattacctgttgctg |
814502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 10370121 - 10370061
Alignment:
| Q |
148 |
ggtttatgctccaggatggcgacgaaatttcaacacaagagaatttgctgaactctacaat |
208 |
Q |
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| T |
10370121 |
ggtttatgctccaggttggcgacagaatttcaacactagagaatttgcagaactttacaat |
10370061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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