View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8518A_low_351 (Length: 227)

Name: NF8518A_low_351
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8518A_low_351
NF8518A_low_351
[»] chr1 (11 HSPs)
chr1 (17-208)||(25700996-25701190)
chr1 (86-138)||(16216427-16216478)
chr1 (55-156)||(38746617-38746716)
chr1 (49-129)||(9109315-9109396)
chr1 (33-126)||(12318404-12318497)
chr1 (32-129)||(25652276-25652373)
chr1 (86-126)||(13547023-13547064)
chr1 (86-126)||(13548934-13548975)
chr1 (72-129)||(41136010-41136066)
chr1 (42-126)||(10157818-10157901)
chr1 (86-129)||(29136438-29136482)
[»] chr3 (6 HSPs)
chr3 (33-129)||(5270563-5270659)
chr3 (30-129)||(50432522-50432619)
chr3 (48-129)||(1683664-1683746)
chr3 (34-129)||(20937848-20937943)
chr3 (51-129)||(49199364-49199442)
chr3 (33-110)||(35138583-35138659)
[»] chr5 (5 HSPs)
chr5 (32-129)||(8038390-8038486)
chr5 (39-127)||(316956-317044)
chr5 (51-126)||(10054714-10054789)
chr5 (47-126)||(33905919-33905998)
chr5 (54-123)||(4160796-4160864)
[»] chr8 (7 HSPs)
chr8 (33-129)||(11137217-11137313)
chr8 (33-129)||(3772382-3772477)
chr8 (51-126)||(7624846-7624919)
chr8 (51-125)||(10240318-10240393)
chr8 (86-126)||(40221938-40221979)
chr8 (90-129)||(2999740-2999780)
chr8 (51-126)||(11384178-11384253)
[»] chr7 (9 HSPs)
chr7 (33-129)||(5116797-5116893)
chr7 (33-130)||(43363349-43363447)
chr7 (65-138)||(14301374-14301446)
chr7 (51-126)||(8452099-8452173)
chr7 (64-130)||(22552498-22552563)
chr7 (86-129)||(22328323-22328367)
chr7 (32-129)||(8359197-8359293)
chr7 (33-129)||(1360054-1360150)
chr7 (33-129)||(29608927-29609023)
[»] chr4 (13 HSPs)
chr4 (34-110)||(41961609-41961684)
chr4 (51-126)||(6199766-6199842)
chr4 (51-129)||(3786153-3786231)
chr4 (25-115)||(6719761-6719850)
chr4 (33-126)||(12073586-12073678)
chr4 (90-128)||(40974970-40975008)
chr4 (33-128)||(33990037-33990131)
chr4 (51-129)||(12119735-12119813)
chr4 (71-129)||(33090071-33090129)
chr4 (86-126)||(27416899-27416940)
chr4 (54-129)||(32091632-32091706)
chr4 (51-126)||(26699341-26699416)
chr4 (51-126)||(55085341-55085416)
[»] chr2 (8 HSPs)
chr2 (51-141)||(16676408-16676498)
chr2 (52-129)||(30217945-30218022)
chr2 (35-126)||(42261368-42261457)
chr2 (25-129)||(28197084-28197186)
chr2 (84-124)||(36282852-36282892)
chr2 (86-124)||(7451314-7451353)
chr2 (51-128)||(34811121-34811197)
chr2 (86-126)||(45727122-45727161)
[»] scaffold0002 (1 HSPs)
scaffold0002 (35-126)||(490203-490292)
[»] chr6 (1 HSPs)
chr6 (35-93)||(11660831-11660888)
[»] scaffold0197 (1 HSPs)
scaffold0197 (51-126)||(1295-1370)


Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 25700996 - 25701190
Alignment:
Q  17 caatatctaaaaaagtcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagat 116  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  25700996 caatatctaaaatagtcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaaccgaaccaaaaaataacaagat 25701095  T
Q  117 aaagagagtagagtatataaaataaacacagcaaggatttt---tctagttcgacataatttgaccagcccaaataaaactctactaacactttt 208  Q
    ||||||||||||||||| |||||||||||||||||||||||   || |||||| |||||||||||||||||||||||||||||| ||||||||||    
T  25701096 aaagagagtagagtatagaaaataaacacagcaaggatttttcatccagttcggcataatttgaccagcccaaataaaactctagtaacactttt 25701190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 138
Target Start/End: Original strand, 16216427 - 16216478
Alignment:
Q  86 aaaccacaatcgaaccaaagaataacaagataaagagagtagagtatataaaa 138  Q
    ||||||||||||||| |||||||||| |||||||||| |||||||||||||||    
T  16216427 aaaccacaatcgaactaaagaataacgagataaagag-gtagagtatataaaa 16216478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 156
Target Start/End: Original strand, 38746617 - 38746716
Alignment:
Q  55 agatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagtagagtatataaaataaacacagcaaggat 154  Q
    ||||| || ||||||| ||| | |||||| |||| |||||| ||| ||||||| |||||||||||||||||| |||||||| ||  |||||| |||||||    
T  38746617 agatctaaactagcaatcaactgtaaagc-caaatcacaattgaatcaaagaacaacaagataaagagagtatagtatatagaa-caacacaccaaggat 38746714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 9109315 - 9109396
Alignment:
Q  49 agatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa--caagataaagagagtagag 129  Q
    ||||||||||| || ||||||||||| | | ||||| || |||||||| |||||||||||||   ||||||||||||||||||    
T  9109315 agatctagatctaagctagcaaccaactgtgaagcataa-ccacaatcaaaccaaagaataaacaaagataaagagagtagag 9109396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 126
Target Start/End: Original strand, 12318404 - 12318497
Alignment:
Q  33 cacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagagagta 126  Q
    |||| |||||||| | ||||||||||  || ||||||||||| | ||||||| ||| || ||| |||||||||||| |||||||||||| |||||    
T  12318404 cacacgcaacaacaacagatctagatttaacctagcaaccaattgtaaagca-aaatcataattgaaccaaagaataaacaagataaagggagta 12318497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 25652373 - 25652276
Alignment:
Q  32 tcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagagagtagag 129  Q
    ||||||| |||||| | | || |||||| ||||||||||| |||| ||||||| ||||||||  | ||||||| ||| ||||| |||||||||||||||    
T  25652373 tcacaagtaacaacaacaaatttagatctaatctagcaactaagtgtaaagca-aaaccacaggcaaaccaaataataaacaaaataaagagagtagag 25652276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 13547023 - 13547064
Alignment:
Q  86 aaaccacaatcgaaccaaagaat-aacaagataaagagagta 126  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  13547023 aaaccacaatccaaccaaagaataaacaagataaagagagta 13547064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 13548934 - 13548975
Alignment:
Q  86 aaaccacaatcgaaccaaagaat-aacaagataaagagagta 126  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  13548934 aaaccacaatccaaccaaagaataaacaagataaagagagta 13548975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 41136066 - 41136010
Alignment:
Q  72 caagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagtagag 129  Q
    ||||| ||||||| ||| |||||  ||| |||||||||||||||||||||||||||||    
T  41136066 caagtgtaaagca-aaatcacaactgaatcaaagaataacaagataaagagagtagag 41136010  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 10157901 - 10157818
Alignment:
Q  42 caacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagta 126  Q
    |||| ||||||||||||| ||| ||| || ||||| ||||| | | | |||||||||| ||||||| |||| |||||||||||||    
T  10157901 caacaatagatctagatcaaatttagaaatcaagtgtaaagta-atatcacaatcgaatcaaagaacaacaggataaagagagta 10157818  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 29136482 - 29136438
Alignment:
Q  86 aaaccacaatcgaaccaaagaataa-caagataaagagagtagag 129  Q
    ||||||||||| |||||||| |||| |||||||||||||||||||    
T  29136482 aaaccacaatctaaccaaaggataaacaagataaagagagtagag 29136438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 33 - 129
Target Start/End: Complemental strand, 5270659 - 5270563
Alignment:
Q  33 cacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagagagtagag 129  Q
    ||||||||||||| ||||||||||||| |||||||||||||||| ||| ||| ||||||||||||||||||||||| |||| ||||||||||||||||    
T  5270659 cacaagcaacaacaatagatctagatctaatctagcaaccaagtgtaatgca-aaaccacaatcgaaccaaagaataaacatgataaagagagtagag 5270563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 50432522 - 50432619
Alignment:
Q  30 agtcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagtagag 129  Q
    |||||||||||||||  ||||||||||||| ||||||||||| ||||  |||||| ||||||||||| |||||||| | |||||||||||||||||||||    
T  50432522 agtcacaagcaacaataatagatctagatccaatctagcaacgaagtggaaagca-aaaccacaatcaaaccaaag-acaacaagataaagagagtagag 50432619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 1683746 - 1683664
Alignment:
Q  48 tagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat--aacaagataaagagagtagag 129  Q
    |||||||||||| ||||||| |||| ||| ||||  | ||||||||||||||||||| ||   |||||||||||||||||||||    
T  1683746 tagatctagatctaatctagaaacctagtgtaaaata-aaaccacaatcgaaccaaaaaaataaacaagataaagagagtagag 1683664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 20937943 - 20937848
Alignment:
Q  34 acaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagtagag 129  Q
    ||||||| |||| | | ||||||||| ||||||  || ||||| ||||| | ||| ||||||||||||||| ||||| |||||||||||||||||||    
T  20937943 acaagcagcaacaacaaatctagatctaatctattaatcaagtgtaaagta-aaatcacaatcgaaccaaataataaacaagataaagagagtagag 20937848  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 129
Target Start/End: Original strand, 49199364 - 49199442
Alignment:
Q  51 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagtagag 129  Q
    ||||||||| ||||||| || |||||  | |||| ||||||||||| |||||||| |||| |||||||||||||||||||    
T  49199364 atctagatctaatctagaaaacaagtgcatagca-aaaccacaatctaaccaaaggataaacaagataaagagagtagag 49199442  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 35138583 - 35138659
Alignment:
Q  33 cacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa 110  Q
    ||||||||||||| | | || |||||| ||||||||||  | || |||| || |||||||||||||||||||||||||    
T  35138583 cacaagcaacaacaacatatttagatccaatctagcaattaggtgtaaaaca-aaaccacaatcgaaccaaagaataa 35138659  T

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Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 8038486 - 8038390
Alignment:
Q  32 tcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagtagag 129  Q
    |||||| ||||||| |||||||| |||| |||||||||||||||| ||||| | ||||||||||||||||||| ||||| ||||||||||||||||||    
T  8038486 tcacaatcaacaacaatagatcttgatctaatctagcaaccaagtgtaaagaa-aaaccacaatcgaaccaaaaaataataagataaagagagtagag 8038390  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 39 - 127
Target Start/End: Complemental strand, 317044 - 316956
Alignment:
Q  39 caacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagagagtag 127  Q
    ||||||||| |||||||||||  ||||||||||||||| ||||||| |||||||||| |||||||||||| ||||| |||||||||||||    
T  317044 caacaacgacagatctagatcttatctagcaaccaagtgtaaagca-aaaccacaattgaaccaaagaataaacaaaataaagagagtag 316956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 126
Target Start/End: Original strand, 10054714 - 10054789
Alignment:
Q  51 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagagagta 126  Q
    ||||||||| |||||||||||||||| ||||||| |||  ||||||||| |||| ||| ||||||||||| ||||||    
T  10054714 atctagatctaatctagcaaccaagtgtaaagca-aaattacaatcgaagcaaaaaataaacaagataaaaagagta 10054789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 126
Target Start/End: Original strand, 33905919 - 33905998
Alignment:
Q  47 atagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagta 126  Q
    ||||||| ||||  |||||||||| ||||| ||||| | |||||||| ||||||||| |||||| ||||||||||||||||    
T  33905919 atagatcaagatttaatctagcaatcaagtgtaaagta-aaaccacattcgaaccaatgaataaacaagataaagagagta 33905998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 4160864 - 4160796
Alignment:
Q  54 tagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagaga 123  Q
    |||||| |||||| ||||||||| ||||||| |||||| |||||||||||||||| |||||||||| ||||    
T  4160864 tagatctaatcta-caaccaagtgtaaagca-aaaccataatcgaaccaaagaataaacaagataatgaga 4160796  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 129
Target Start/End: Complemental strand, 11137313 - 11137217
Alignment:
Q  33 cacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagagagtagag 129  Q
    ||||||||||||  | | ||||| ||| |||||||||| ||||||||||| | |||||||||||||||||| |||| |||||||||||||||||||||    
T  11137313 cacaagcaacaataacatatctaaatctaatctagcaatcaagtataaag-aaaaaccacaatcgaaccaatgaataaacaagataaagagagtagag 11137217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 129
Target Start/End: Complemental strand, 3772477 - 3772382
Alignment:
Q  33 cacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagtagag 129  Q
    ||||||||||||| | | ||||||||  ||||||| || |||||  | |||| ||||||||||| ||||||||||||| |||||||||||||||||||    
T  3772477 cacaagcaacaacaaca-atctagatttaatctagaaatcaagtgcatagca-aaaccacaatctaaccaaagaataaacaagataaagagagtagag 3772382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 126
Target Start/End: Original strand, 7624846 - 7624919
Alignment:
Q  51 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagta 126  Q
    ||||||||| || |||||||||| || ||||| | |||||||||||||||||||||| || |||| ||||||||||    
T  7624846 atctagatctaa-ctagcaaccatgtgtaaagta-aaaccacaatcgaaccaaagaacaataagacaaagagagta 7624919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 125
Target Start/End: Complemental strand, 10240393 - 10240318
Alignment:
Q  51 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaa--taacaagataaagagagt 125  Q
    ||||||||| ||||||| ||| || | ||||||| ||||||||||||||||||| ||   |||||||||||||||||    
T  10240393 atctagatctaatctagaaacgaaatgtaaagca-aaaccacaatcgaaccaaaaaaataaacaagataaagagagt 10240318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 40221979 - 40221938
Alignment:
Q  86 aaaccacaatcgaaccaaagaat-aacaagataaagagagta 126  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  40221979 aaaccacaatccaaccaaagaatgaacaagataaagagagta 40221938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 129
Target Start/End: Original strand, 2999740 - 2999780
Alignment:
Q  90 cacaatcgaaccaaagaataa-caagataaagagagtagag 129  Q
    ||||||| ||||||||||||| |||||||||||||||||||    
T  2999740 cacaatctaaccaaagaataaacaagataaagagagtagag 2999780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 126
Target Start/End: Complemental strand, 11384253 - 11384178
Alignment:
Q  51 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagta 126  Q
    ||||||||| ||||||| || |||||  | |||| ||||||||||| |||||||| |||| ||||||||||||||||    
T  11384253 atctagatctaatctagaaaacaagtgcatagca-aaaccacaatctaaccaaaggataaacaagataaagagagta 11384178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 129
Target Start/End: Complemental strand, 5116893 - 5116797
Alignment:
Q  33 cacaagcaacaacgatagatctagatc-gaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagtagag 129  Q
    ||||||||||||| ||| ||||||||| |||||| | |||||||| ||||||| || |||||||||||||| | ||||||||||||||||| ||||||    
T  5116893 cacaagcaacaacaatatatctagatctgaatctcgtaaccaagtgtaaagca-aatccacaatcgaaccatataataacaagataaagagggtagag 5116797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 130
Target Start/End: Original strand, 43363349 - 43363447
Alignment:
Q  33 cacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaa-taacaagataaagagagtagagt 130  Q
    ||||||||||||  | | ||||||||| |||||| |||| |  |  |||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  43363349 cacaagcaacaataacaaatctagatctaatctaacaactatttgcaaagcacaaaccacaatcgaaccaaagaacaaacaagataaagagagtagagt 43363447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 138
Target Start/End: Original strand, 14301374 - 14301446
Alignment:
Q  65 tagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagtagagtatataaaa 138  Q
    ||||||| |||| | ||||| ||| ||||||| || ||||||||||||||||||||||||||||||||| ||||    
T  14301374 tagcaactaagtgtcaagca-aaatcacaatcaaatcaaagaataacaagataaagagagtagagtatagaaaa 14301446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 126
Target Start/End: Original strand, 8452099 - 8452173
Alignment:
Q  51 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagta 126  Q
    ||||||||| ||||||  || ||| | ||||||| ||||||||||||||||||||||| |||||||||| ||||||    
T  8452099 atctagatctaatctaaaaatcaaatgtaaagca-aaaccacaatcgaaccaaagaatgacaagataaaaagagta 8452173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 130
Target Start/End: Original strand, 22552498 - 22552563
Alignment:
Q  64 ctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagtagagt 130  Q
    ||||||||||||| ||||| | ||||| | |||| ||||||||| ||||||||||||||||||||||    
T  22552498 ctagcaaccaagtgtaaagaa-aaacctcgatcgtaccaaagaacaacaagataaagagagtagagt 22552563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 22328323 - 22328367
Alignment:
Q  86 aaaccacaatcgaaccaaagaat-aacaagataaagagagtagag 129  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||    
T  22328323 aaaccacaatcgaacaaaagaataaacaagataaagagagtagag 22328367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 129
Target Start/End: Original strand, 8359197 - 8359293
Alignment:
Q  32 tcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagagagtagag 129  Q
    |||||||||||||| | | ||||||||| ||||||| || |||||  | |||| ||||||||||| |||||||| || |||||||||| ||||||||||    
T  8359197 tcacaagcaacaacaaca-atctagatctaatctagaaaacaagtgcatagca-aaaccacaatctaaccaaaggataaacaagataatgagagtagag 8359293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 129
Target Start/End: Original strand, 1360054 - 1360150
Alignment:
Q  33 cacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaa-taacaagataaagagagtagag 129  Q
    ||||||||||||| | |  | |||||| ||||||  ||| |||| ||||||| ||||||||||||||| ||||||  ||||||||||||||| |||||    
T  1360054 cacaagcaacaacaacaattttagatctaatctaaaaactaagtgtaaagca-aaaccacaatcgaacaaaagaagaaacaagataaagagaatagag 1360150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 129
Target Start/End: Complemental strand, 29609023 - 29608927
Alignment:
Q  33 cacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagtagag 129  Q
    ||||||||||||| | | ||||||||| ||| ||| ||||||||  | | || ||||||||||| || ||||| |||| |||||||||||||||||||    
T  29609023 cacaagcaacaacaaca-atctagatctaatatagaaaccaagtgcatatcaaaaaccacaatctaagcaaaggataaacaagataaagagagtagag 29608927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 41961684 - 41961609
Alignment:
Q  34 acaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa 110  Q
    |||||||||||| ||||||||||||| ||||||| ||||| || ||||||| ||||||||||| |||||||||||||    
T  41961684 acaagcaacaacaatagatctagatctaatctagtaaccaggtttaaagca-aaaccacaatcaaaccaaagaataa 41961609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 126
Target Start/End: Original strand, 6199766 - 6199842
Alignment:
Q  51 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaa-taacaagataaagagagta 126  Q
    ||||||||| |||||| |||| || |  |||||||||||||||||||||||||||||  ||||||||||||||||||    
T  6199766 atctagatctaatctaacaactaattgcaaagcacaaaccacaatcgaaccaaagaacaaacaagataaagagagta 6199842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 51 - 129
Target Start/End: Complemental strand, 3786231 - 3786153
Alignment:
Q  51 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagagagtagag 129  Q
    ||||||||| ||| |||||||||||| |||| || |||  |||||||||||||||||| |||||||||||||||||||||    
T  3786231 atctagatctaatatagcaaccaagtgtaaaaca-aaattacaatcgaaccaaagaatgaacaagataaagagagtagag 3786153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 6719850 - 6719761
Alignment:
Q  25 aaaaaagtcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaaga 115  Q
    |||| ||||||| |||| ||| | ||||||||||| ||||||| ||||||||  |||||| ||||||||||  |||||||||| |||||||    
T  6719850 aaaacagtcacaggcaaaaacaacagatctagatctaatctagaaaccaagtgcaaagca-aaaccacaataaaaccaaagaacaacaaga 6719761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 126
Target Start/End: Complemental strand, 12073678 - 12073586
Alignment:
Q  33 cacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagagagta 126  Q
    ||||||||||||| | | ||||||||| ||||||| ||||||||  | | || ||||||||||| ||||||||||| ||||||||||||||||||    
T  12073678 cacaagcaacaacaaca-atctagatctaatctagaaaccaagtgcataaca-aaaccacaatctaaccaaagaataaacaagataaagagagta 12073586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 128
Target Start/End: Original strand, 40974970 - 40975008
Alignment:
Q  90 cacaatcgaaccaaagaataacaagataaagagagtaga 128  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  40974970 cacaatcgaaccaaagaacaacaagataaagagagtaga 40975008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 128
Target Start/End: Complemental strand, 33990131 - 33990037
Alignment:
Q  33 cacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagtaga 128  Q
    ||||||||||||| | | ||||||||| ||||||| ||||||||  | |||| || ||| ||| |||||||||||||| ||||||||||||||||||    
T  33990131 cacaagcaacaacaaca-atctagatctaatctagaaaccaagtgcatagca-aatccagaattgaaccaaagaataaacaagataaagagagtaga 33990037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 129
Target Start/End: Complemental strand, 12119813 - 12119735
Alignment:
Q  51 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagtagag 129  Q
    ||||||||| ||||||| ||| ||||  | |||| |||||||||||| |||||||| ||| |||||||||||||||||||    
T  12119813 atctagatctaatctagaaactaagtgcatagca-aaaccacaatcggaccaaagactaaacaagataaagagagtagag 12119735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 129
Target Start/End: Complemental strand, 33090129 - 33090071
Alignment:
Q  71 ccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagagagtagag 129  Q
    |||||| ||||||| ||||||||||||||||||| ||| |||||||||||||||| ||||    
T  33090129 ccaagtgtaaagca-aaaccacaatcgaaccaaaaaataaacaagataaagagagcagag 33090071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 27416899 - 27416940
Alignment:
Q  86 aaaccacaatcgaaccaaagaat-aacaagataaagagagta 126  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  27416899 aaaccacaatccaaccaaagaataaacaagataaagagagta 27416940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 32091706 - 32091632
Alignment:
Q  54 tagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagtagag 129  Q
    |||||| |||||||||| ||||| ||||| |  ||||||||| |||| ||||||||| |||||||||||| ||||||    
T  32091706 tagatctaatctagcaaacaagtgtaaagaa--aaccacaattgaactaaagaataaacaagataaagagcgtagag 32091632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 126
Target Start/End: Original strand, 26699341 - 26699416
Alignment:
Q  51 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagta 126  Q
    ||||||||| ||||||| | ||||||  | |||| |||||| ||| |||||||||||||| ||||||||||||||||    
T  26699341 atctagatctaatctagaatccaagtgcatagca-aaaccataattgaaccaaagaataaacaagataaagagagta 26699416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 126
Target Start/End: Original strand, 55085341 - 55085416
Alignment:
Q  51 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagta 126  Q
    ||||||||| ||| ||| ||||||||  | |||| ||||||||||| |||||| |||||| ||||||||||||||||    
T  55085341 atctagatctaatttagaaaccaagtgcatagca-aaaccacaatccaaccaaggaataaacaagataaagagagta 55085416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 51 - 141
Target Start/End: Complemental strand, 16676498 - 16676408
Alignment:
Q  51 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaa-taacaagataaagagagtagagtatataaaataa 141  Q
    ||||||||| ||||||||||| |||| |||| || ||||||||||||||||||||||  ||| ||||||||| ||||||||||||| |||||    
T  16676498 atctagatctaatctagcaacaaagtgtaaatca-aaaccacaatcgaaccaaagaacaaactagataaagaaagtagagtatatagaataa 16676408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 30217945 - 30218022
Alignment:
Q  52 tctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagtagag 129  Q
    |||||||| ||||||| |||||||| |||| ||||| |||||||| ||||||||||||| |||||||||||||||||||    
T  30217945 tctagatccaatctagaaaccaagtgtaaaacacaa-ccacaatcaaaccaaagaataaacaagataaagagagtagag 30218022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 126
Target Start/End: Original strand, 42261368 - 42261457
Alignment:
Q  35 caagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagta 126  Q
    ||||||||||| ||| ||||||||| |||||||||||||||| || |||| ||||||||| | ||||||  ||||| ||||||||||||||||    
T  42261368 caagcaacaacaatatatctagatctaatctagcaaccaagtgtatagca-aaaccacaaacaaaccaa--aataatcaagataaagagagta 42261457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 28197186 - 28197084
Alignment:
Q  25 aaaaaagtcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagag 124  Q
    |||| |||||||||||||||||  | ||||||||   ||||||||||||||| ||||||| || | ||||| ||| ||||||| |||| ||| |||||||    
T  28197186 aaaatagtcacaagcaacaacggcatatctagattttatctagcaaccaagtgtaaagca-aaccaacaattgaatcaaagaacaacatgat-aagagag 28197089  T
Q  125 tagag 129  Q
    |||||    
T  28197088 tagag 28197084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 36282852 - 36282892
Alignment:
Q  84 acaaaccacaatcgaaccaaagaataacaagataaagagag 124  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  36282852 acaaagcacaatcgaatcaaagaataacaagataaagagag 36282892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 124
Target Start/End: Complemental strand, 7451353 - 7451314
Alignment:
Q  86 aaaccacaatcgaaccaaagaat-aacaagataaagagag 124  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  7451353 aaaccacaatcgaaccaaagaataaacaagataaagagag 7451314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 34811121 - 34811197
Alignment:
Q  51 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagtaga 128  Q
    ||||||||| ||||||||||| || | ||||| | |||| |||| ||||  |||||| ||||||||||||||||||||    
T  34811121 atctagatctaatctagcaactaattgtaaagta-aaactacaaccgaataaaagaacaacaagataaagagagtaga 34811197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 45727161 - 45727122
Alignment:
Q  86 aaaccacaatcgaaccaaagaataacaagataaagagagta 126  Q
    ||||||||||| ||||||||||||| |||||||||||||||    
T  45727161 aaaccacaatccaaccaaagaataa-aagataaagagagta 45727122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 126
Target Start/End: Original strand, 490203 - 490292
Alignment:
Q  35 caagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagta 126  Q
    ||||||||||| ||| ||||||||| |||||||||||||||| || |||| ||||||||| | ||||||  ||||| ||||||||||||||||    
T  490203 caagcaacaacaatatatctagatctaatctagcaaccaagtgtatagca-aaaccacaaacaaaccaa--aataatcaagataaagagagta 490292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 11660888 - 11660831
Alignment:
Q  35 caagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccaca 93  Q
    ||||||||||| | ||||||||||| |||||||||||||||| ||||||| ||||||||    
T  11660888 caagcaacaacaacagatctagatctaatctagcaaccaagtgtaaagca-aaaccaca 11660831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 126
Target Start/End: Original strand, 1295 - 1370
Alignment:
Q  51 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagagagta 126  Q
    ||||||||| ||||||| |||||||| ||||| | ||||||||||| ||||||| ||| || |||||||||||||||    
T  1295 atctagatctaatctagaaaccaagtgtaaagta-aaaccacaatcaaaccaaaaaataaataagataaagagagta 1370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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