View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8518A_low_359 (Length: 226)

Name: NF8518A_low_359
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8518A_low_359
NF8518A_low_359
[»] chr1 (6 HSPs)
chr1 (16-207)||(34366865-34367052)
chr1 (114-152)||(28259953-28259991)
chr1 (114-175)||(46443152-46443213)
chr1 (114-166)||(5562858-5562910)
chr1 (118-150)||(26095053-26095085)
chr1 (114-142)||(28750271-28750299)
[»] chr8 (5 HSPs)
chr8 (114-144)||(15890254-15890284)
chr8 (114-152)||(32723920-32723958)
chr8 (114-152)||(32974067-32974105)
chr8 (114-142)||(23678506-23678534)
chr8 (114-142)||(45184229-45184257)
[»] chr7 (2 HSPs)
chr7 (114-152)||(40081685-40081723)
chr7 (114-142)||(26626287-26626315)
[»] chr6 (3 HSPs)
chr6 (114-152)||(18328064-18328102)
chr6 (114-142)||(25059540-25059568)
chr6 (114-142)||(30579311-30579339)
[»] chr3 (3 HSPs)
chr3 (114-152)||(46175821-46175859)
chr3 (114-142)||(9557599-9557627)
chr3 (114-142)||(24681660-24681688)
[»] chr2 (3 HSPs)
chr2 (114-152)||(5288374-5288412)
chr2 (114-142)||(11723424-11723452)
chr2 (114-142)||(41974457-41974485)
[»] chr4 (3 HSPs)
chr4 (114-167)||(4479347-4479400)
chr4 (114-142)||(2251544-2251572)
chr4 (114-178)||(44886669-44886733)
[»] chr5 (5 HSPs)
chr5 (114-142)||(7948989-7949017)
chr5 (114-142)||(19089290-19089318)
chr5 (114-142)||(21071485-21071513)
chr5 (114-142)||(30187942-30187970)
chr5 (114-142)||(39084634-39084662)


Alignment Details
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 34367052 - 34366865
Alignment:
Q  16 tttcgtgttcaagccaaattttatatcaatcaatcacatgacacttgccaggtagacatggcattatagttatcaaggactaaaatttgaacaatttatt 115  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||       
T  34367052 tttcatgttcaagccaaattttatatcaatcaatcacatgacacttgccaggcagacatggcgttatagttatcaaggactaaaatttgaacaattt--- 34366956  T
Q  116 tattttgtaggaactaaaaacaaaactttatatatttgcagagacgaaaaatatatttaatccattaagacaagtaattatatatcttacgt 207  Q
     |||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34366955 -attttgtaggaactaaaaacgaaactgtatatatttgtagagacgaaaaatatatttaatccattaagacaagtaattatatatcttacgt 34366865  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 152
Target Start/End: Original strand, 28259953 - 28259991
Alignment:
Q  114 tttattttgtaggaactaaaaacaaaactttatatattt 152  Q
    ||||||||||||||||||||||||||||| || ||||||    
T  28259953 tttattttgtaggaactaaaaacaaaactgtaaatattt 28259991  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 175
Target Start/End: Original strand, 46443152 - 46443213
Alignment:
Q  114 tttattttgtaggaactaaaaacaaaactttatatatttgcagagacgaaaaatatatttaa 175  Q
    ||||||||||| ||| |||||| |||| |||||||||||  | |||||||||| ||||||||    
T  46443152 tttattttgtatgaagtaaaaataaaattttatatatttataaagacgaaaaacatatttaa 46443213  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 5562858 - 5562910
Alignment:
Q  114 tttattttgtaggaactaaaaacaaaactttatatatttgcagagacgaaaaa 166  Q
    ||||||||||||| ||||||||||||||| || ||||||  |||||| |||||    
T  5562858 tttattttgtagggactaaaaacaaaactgtaaatatttatagagactaaaaa 5562910  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 150
Target Start/End: Complemental strand, 26095085 - 26095053
Alignment:
Q  118 ttttgtaggaactaaaaacaaaactttatatat 150  Q
    |||||||||||||||||||||||||||| ||||    
T  26095085 ttttgtaggaactaaaaacaaaactttagatat 26095053  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 28750271 - 28750299
Alignment:
Q  114 tttattttgtaggaactaaaaacaaaact 142  Q
    |||||||||||||||||||||||||||||    
T  28750271 tttattttgtaggaactaaaaacaaaact 28750299  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 144
Target Start/End: Original strand, 15890254 - 15890284
Alignment:
Q  114 tttattttgtaggaactaaaaacaaaacttt 144  Q
    |||||||||||||||||||||||||||||||    
T  15890254 tttattttgtaggaactaaaaacaaaacttt 15890284  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 152
Target Start/End: Original strand, 32723920 - 32723958
Alignment:
Q  114 tttattttgtaggaactaaaaacaaaactttatatattt 152  Q
    ||||||||||||||||||||||||||||| || ||||||    
T  32723920 tttattttgtaggaactaaaaacaaaactgtaaatattt 32723958  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 152
Target Start/End: Complemental strand, 32974105 - 32974067
Alignment:
Q  114 tttattttgtaggaactaaaaacaaaactttatatattt 152  Q
    ||||||||||||||||||||||||||||| || ||||||    
T  32974105 tttattttgtaggaactaaaaacaaaactataaatattt 32974067  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 23678506 - 23678534
Alignment:
Q  114 tttattttgtaggaactaaaaacaaaact 142  Q
    |||||||||||||||||||||||||||||    
T  23678506 tttattttgtaggaactaaaaacaaaact 23678534  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 45184229 - 45184257
Alignment:
Q  114 tttattttgtaggaactaaaaacaaaact 142  Q
    |||||||||||||||||||||||||||||    
T  45184229 tttattttgtaggaactaaaaacaaaact 45184257  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 152
Target Start/End: Complemental strand, 40081723 - 40081685
Alignment:
Q  114 tttattttgtaggaactaaaaacaaaactttatatattt 152  Q
    ||||||||||||||||||||||||||||| || ||||||    
T  40081723 tttattttgtaggaactaaaaacaaaactgtaaatattt 40081685  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 142
Target Start/End: Complemental strand, 26626315 - 26626287
Alignment:
Q  114 tttattttgtaggaactaaaaacaaaact 142  Q
    |||||||||||||||||||||||||||||    
T  26626315 tttattttgtaggaactaaaaacaaaact 26626287  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 152
Target Start/End: Original strand, 18328064 - 18328102
Alignment:
Q  114 tttattttgtaggaactaaaaacaaaactttatatattt 152  Q
    ||||||||||||||||||||||||||||| || ||||||    
T  18328064 tttattttgtaggaactaaaaacaaaactgtaaatattt 18328102  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 25059540 - 25059568
Alignment:
Q  114 tttattttgtaggaactaaaaacaaaact 142  Q
    |||||||||||||||||||||||||||||    
T  25059540 tttattttgtaggaactaaaaacaaaact 25059568  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 142
Target Start/End: Complemental strand, 30579339 - 30579311
Alignment:
Q  114 tttattttgtaggaactaaaaacaaaact 142  Q
    |||||||||||||||||||||||||||||    
T  30579339 tttattttgtaggaactaaaaacaaaact 30579311  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 152
Target Start/End: Original strand, 46175821 - 46175859
Alignment:
Q  114 tttattttgtaggaactaaaaacaaaactttatatattt 152  Q
    ||||||||||||||||||||||||||||| || ||||||    
T  46175821 tttattttgtaggaactaaaaacaaaactgtaaatattt 46175859  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 142
Target Start/End: Complemental strand, 9557627 - 9557599
Alignment:
Q  114 tttattttgtaggaactaaaaacaaaact 142  Q
    |||||||||||||||||||||||||||||    
T  9557627 tttattttgtaggaactaaaaacaaaact 9557599  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 24681660 - 24681688
Alignment:
Q  114 tttattttgtaggaactaaaaacaaaact 142  Q
    |||||||||||||||||||||||||||||    
T  24681660 tttattttgtaggaactaaaaacaaaact 24681688  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 152
Target Start/End: Original strand, 5288374 - 5288412
Alignment:
Q  114 tttattttgtaggaactaaaaacaaaactttatatattt 152  Q
    ||||||||||||||||||||||||||||| || ||||||    
T  5288374 tttattttgtaggaactaaaaacaaaactataaatattt 5288412  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 142
Target Start/End: Complemental strand, 11723452 - 11723424
Alignment:
Q  114 tttattttgtaggaactaaaaacaaaact 142  Q
    |||||||||||||||||||||||||||||    
T  11723452 tttattttgtaggaactaaaaacaaaact 11723424  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 41974457 - 41974485
Alignment:
Q  114 tttattttgtaggaactaaaaacaaaact 142  Q
    |||||||||||||||||||||||||||||    
T  41974457 tttattttgtaggaactaaaaacaaaact 41974485  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 4479347 - 4479400
Alignment:
Q  114 tttattttgtaggaactaaaaacaaaactttatatatttgcagagacgaaaaat 167  Q
    ||||||||||||| ||||||||||||||| |  |||||| ||||||| ||||||    
T  4479347 tttattttgtagggactaaaaacaaaactgtgaatatttacagagactaaaaat 4479400  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 2251544 - 2251572
Alignment:
Q  114 tttattttgtaggaactaaaaacaaaact 142  Q
    |||||||||||||||||||||||||||||    
T  2251544 tttattttgtaggaactaaaaacaaaact 2251572  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 44886733 - 44886669
Alignment:
Q  114 tttattttgtaggaactaaaaacaaaactttatatatttgcagagacgaaaaatatatttaatcc 178  Q
    |||||||| | ||||||||||| |||| |||| ||||||  || ||| |||||||||||||||||    
T  44886733 tttattttattggaactaaaaataaaattttaaatatttaaagggacaaaaaatatatttaatcc 44886669  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 142
Target Start/End: Complemental strand, 7949017 - 7948989
Alignment:
Q  114 tttattttgtaggaactaaaaacaaaact 142  Q
    |||||||||||||||||||||||||||||    
T  7949017 tttattttgtaggaactaaaaacaaaact 7948989  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 142
Target Start/End: Complemental strand, 19089318 - 19089290
Alignment:
Q  114 tttattttgtaggaactaaaaacaaaact 142  Q
    |||||||||||||||||||||||||||||    
T  19089318 tttattttgtaggaactaaaaacaaaact 19089290  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 142
Target Start/End: Complemental strand, 21071513 - 21071485
Alignment:
Q  114 tttattttgtaggaactaaaaacaaaact 142  Q
    |||||||||||||||||||||||||||||    
T  21071513 tttattttgtaggaactaaaaacaaaact 21071485  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 30187942 - 30187970
Alignment:
Q  114 tttattttgtaggaactaaaaacaaaact 142  Q
    |||||||||||||||||||||||||||||    
T  30187942 tttattttgtaggaactaaaaacaaaact 30187970  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 39084634 - 39084662
Alignment:
Q  114 tttattttgtaggaactaaaaacaaaact 142  Q
    |||||||||||||||||||||||||||||    
T  39084634 tttattttgtaggaactaaaaacaaaact 39084662  T

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