View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_363 (Length: 224)
Name: NF8518A_low_363
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_363 |
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Alignment Details
Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 36 - 150
Target Start/End: Original strand, 3703867 - 3703981
Alignment:
| Q |
36 |
tataagtagaatgttcaagtttgagtttaacttttacaagttatttgttaaaaaactcatagtcaatatataagtccacttcaaaatttctataggttct |
135 |
Q |
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|||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3703867 |
tataagtagaatgtcctagtttgaatttaacttttacaagttatttgttaaaaaactcatagtcaatatataagtccacttcaaaatttctataagttct |
3703966 |
T |
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| Q |
136 |
agttgcaaaatctct |
150 |
Q |
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| T |
3703967 |
agttgcaaaatctct |
3703981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 3695351 - 3695413
Alignment:
| Q |
82 |
gttaaaaaactcatagtcaatatataagtccacttcaaaatttctataggttctagttgcaaa |
144 |
Q |
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| T |
3695351 |
gttaaaaaactcatagttaatatataagtccatttcaaaatatctataagttctagttgcaaa |
3695413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 3704007 - 3704045
Alignment:
| Q |
178 |
agcccaaaatcttttttaagctaaaataaacccaccctt |
216 |
Q |
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| T |
3704007 |
agcccaaaatcttttttaagctaaaataaacgcaccctt |
3704045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 3675975 - 3676009
Alignment:
| Q |
37 |
ataagtagaatgttcaagtttgagtttaactttta |
71 |
Q |
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| T |
3675975 |
ataagtagaatgtccaagtttgagtttaactttta |
3676009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 3650517 - 3650577
Alignment:
| Q |
86 |
aaaaactcatagtcaatatataagtccacttcaaaatttctataggttcta-gttgcaaaa |
145 |
Q |
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||||||| |||||||||||||||||||| ||||| |||| |||| || ||| ||||||||| |
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| T |
3650517 |
aaaaactaatagtcaatatataagtccatttcaatatttatataagtcctaggttgcaaaa |
3650577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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