View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_374 (Length: 221)
Name: NF8518A_low_374
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_374 |
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| [»] chr3 (8 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 9348598 - 9348807
Alignment:
| Q |
12 |
atgaatgggtcgaagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggtttttccatgttgtggtggct |
111 |
Q |
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| T |
9348598 |
atgaatgggtcgaagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgatgaattggggtttttccatgttgtggtggcc |
9348697 |
T |
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| Q |
112 |
tgacaaggacgagagtgcgtttggagaggtaatagaatgttgagttggtattgttgagggaatcaatgatttctttttctgagtaatggtagtcttcgga |
211 |
Q |
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| T |
9348698 |
tgacaaggacgagagtgcgtttggagaggtaatagaatgttgagttggtattgttgagggaatcaatgatttctttttctgagagatggtagtttctgga |
9348797 |
T |
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| Q |
212 |
ttcatgtacg |
221 |
Q |
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| T |
9348798 |
atcatgtacg |
9348807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 9370252 - 9370461
Alignment:
| Q |
12 |
atgaatgggtcgaagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggtttttccatgttgtggtggct |
111 |
Q |
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| T |
9370252 |
atgactgggttgaagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggtttttccatgttgtggtggct |
9370351 |
T |
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| Q |
112 |
tgacaaggacgagagtgcgtttggagaggtaatagaatgttgagttggtattgttgagggaatcaatgatttctttttctgagtaatggtagtcttcgga |
211 |
Q |
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| T |
9370352 |
tgacaaggacgagagtgcgtttggagaggtaacataatggtgagttggtattgttgagggaatcaatgatttctttttctgaggaatggtagtttccgga |
9370451 |
T |
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| Q |
212 |
ttcatgtacg |
221 |
Q |
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| T |
9370452 |
atcatatacg |
9370461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 9341327 - 9341396
Alignment:
| Q |
24 |
aagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggttt |
93 |
Q |
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| T |
9341327 |
aagagtttggttttgccatgtgagttttgagtaaatctaatcaaccaaggacgacgaggaattagggttt |
9341396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 9407962 - 9408006
Alignment:
| Q |
33 |
gtttttccatgtgagttttgtgtaactctaatcaaccaaggacga |
77 |
Q |
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| T |
9407962 |
gttttgccatgtgagttttgggtaactctaatcaaccaaggacga |
9408006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 9426170 - 9426213
Alignment:
| Q |
34 |
tttttccatgtgagttttgtgtaactctaatcaaccaaggacga |
77 |
Q |
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| T |
9426170 |
ttttgccatgtgagttttgggtaactctaatcaaccaaggacga |
9426213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 9441300 - 9441257
Alignment:
| Q |
34 |
tttttccatgtgagttttgtgtaactctaatcaaccaaggacga |
77 |
Q |
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| T |
9441300 |
ttttgccatgtgagttttgggtaactctaatcaaccaaggacga |
9441257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 9417167 - 9417210
Alignment:
| Q |
34 |
tttttccatgtgagttttgtgtaactctaatcaaccaaggacga |
77 |
Q |
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| T |
9417167 |
ttttgccatgtgagttttgggtaactctgatcaaccaaggacga |
9417210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 9353538 - 9353587
Alignment:
| Q |
44 |
tgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggttt |
93 |
Q |
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| T |
9353538 |
tgagttttgggtaattcgtatcaaccaaggccgacgacgaattagggttt |
9353587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 250861 - 250825
Alignment:
| Q |
44 |
tgagttttgtgtaactctaatcaaccaaggacgacga |
80 |
Q |
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| T |
250861 |
tgagttttgtgtaattctaaacaaccaaggacgacga |
250825 |
T |
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