View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_379 (Length: 219)
Name: NF8518A_low_379
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_379 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 13292858 - 13292640
Alignment:
| Q |
1 |
aagtccagacccattaagtaaattattcatatcataccagtgttgtttgttactatgtaataaagtcaatattaaatggatttaacttaatgtttaaaac |
100 |
Q |
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| T |
13292858 |
aagtccagacccattaagtaaattattcatatcataccagtgttgtttgttactatgtaacaaagtcaaaattaaatggatttaacttaatgtttaaaac |
13292759 |
T |
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| Q |
101 |
acaaacaatacgtcaacaatgcatgcatttggaacctcaaattggaagatatcatgattttgttgagagaaattaaacaatattcaatatatgcacataa |
200 |
Q |
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||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
13292758 |
acaaacaatacgtaaacaatgcatacatttggaacctcaaattggaagatatcatgattttgttgagagaaattaaacaatattcaatacatgcacatat |
13292659 |
T |
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| Q |
201 |
ctgacgaaaaagcagaaga |
219 |
Q |
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|||||||| |||||||||| |
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| T |
13292658 |
ctgacgaagaagcagaaga |
13292640 |
T |
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