View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8518A_low_380 (Length: 219)
Name: NF8518A_low_380
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_380 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 33 - 199
Target Start/End: Original strand, 1744177 - 1744343
Alignment:
| Q |
33 |
tcgaacaatatccatcctcaaactcaaatttcaacaagcctgttgatttcgtgaaactgtctaaagatgatttgattcatagatccaaggtgtcggagca |
132 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1744177 |
tcgaacaagatccatcctcaaactcaaatctcaacaagcctattgatttcgtgaaactgtctaaagatgatttgattcacagatccaaggtgtcggagca |
1744276 |
T |
|
| Q |
133 |
caaatcttttagcactatgcaagttggttcatcatcttgttttccaaataacaacaataaaggaaac |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1744277 |
caaatcttttagcactatgcaagttggttcatcatcttgttttccaaataacaacaataaaggaaac |
1744343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 33 - 195
Target Start/End: Original strand, 1738834 - 1738996
Alignment:
| Q |
33 |
tcgaacaatatccatcctcaaactcaaatttcaacaagcctgttgatttcgtgaaactgtctaaagatgatttgattcatagatccaaggtgtcggagca |
132 |
Q |
| |
|
||||||| ||||||| |||||||| ||||||||||||||| ||||||| |||||||| |||||||| |||| |||||| | ||||||||||| ||||| |
|
|
| T |
1738834 |
tcgaacatgatccatcttcaaactctaatttcaacaagcctcttgattttgtgaaactatctaaagaggattcgattcacatgtccaaggtgtcagagca |
1738933 |
T |
|
| Q |
133 |
caaatcttttagcactatgcaagttggttcatcatcttgttttccaaataacaacaataaagg |
195 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1738934 |
caaaccttttagcactatgcaagttggttcatcatctcgttttccaaataacaacaataaagg |
1738996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 1724247 - 1724323
Alignment:
| Q |
33 |
tcgaacaatatccatcctcaaactcaaatttcaacaagcctgttgatttcgtgaaactgtctaaagatgatttgatt |
109 |
Q |
| |
|
|||||||| |||||||||||||||| |||| |||||||||| ||||| ||||| || || |||||||||| |||| |
|
|
| T |
1724247 |
tcgaacaagatccatcctcaaactcgaattccaacaagcctagtgattatgtgaagctatcaaaagatgattcgatt |
1724323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 189
Target Start/End: Original strand, 1759999 - 1760035
Alignment:
| Q |
153 |
aagttggttcatcatcttgttttccaaataacaacaa |
189 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1759999 |
aagttggttcatcatctggttttccaaataacaacaa |
1760035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University