View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_381 (Length: 219)
Name: NF8518A_low_381
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_381 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 20 - 191
Target Start/End: Complemental strand, 52851592 - 52851421
Alignment:
| Q |
20 |
catttgatacgtgaaaaatcggaaaatgatccttttgtgtcattttcatcttttcaagattcatcaatttatatagtttgtgacactcatcgtgggatag |
119 |
Q |
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| T |
52851592 |
catttgatacatgaaaaatcggaaaatgatccttttgtgtcattttcatcttttcaagattcatcaatttatatagtttgtgacactcatcgtgggatag |
52851493 |
T |
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| Q |
120 |
agaataatgaaatatataaagagtattgatatttgaacatccatatctgacaacttatttttggagagagaa |
191 |
Q |
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| T |
52851492 |
agaataatgaaatatataaagagtagtgatatttgaacatccatccgagacaacttctttttggagagagaa |
52851421 |
T |
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