View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8518A_low_383 (Length: 219)
Name: NF8518A_low_383
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_383 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 28250305 - 28250104
Alignment:
| Q |
1 |
tcagatcaaaacaacgaagccttctacagttaattatcaatctcttcccttcagagaaagcagcttttccaatcaacttcctttgctgcctcctccgttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28250305 |
tcagatcaaaacaacgaagccttctagagttaattatcaatctcttcccttcggagaaagcagcttttccaatcaacttcctttgctgcctcctccgttg |
28250206 |
T |
|
| Q |
101 |
cgccatccacccccgcgcctccaccgtctgcaaaaccgaactcgagaaacgaatctcggcaatcctcgaacacgttaccgtcgacgacctcctcgtgatg |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28250205 |
cgccatccacctccgcgcctccaccgtctgcaaaaccgaactcgagaaacgaatctcggcaatcctcgaacacgttaccgtcgacgacctcctcgtgatg |
28250106 |
T |
|
| Q |
201 |
tc |
202 |
Q |
| |
|
|| |
|
|
| T |
28250105 |
tc |
28250104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 154
Target Start/End: Complemental strand, 32179846 - 32179733
Alignment:
| Q |
41 |
tctcttcccttcagagaaagcagcttttccaatcaacttcctttgctgcctcctccgttgcgccatccacccccgcgcctccaccgtctgcaaaaccgaa |
140 |
Q |
| |
|
|||||| || || |||||||| |||||||| ||||||||||| ||||| || |||||||| || ||| ||| |||||||| | || ||||| |||| |
|
|
| T |
32179846 |
tctctttccgtcggagaaagctgcttttccgatcaacttcctctgctgtcttctccgttgtgctatctacctacgcgcctcaagcgcgtgcaagcgcgaa |
32179747 |
T |
|
| Q |
141 |
ctcgagaaacgaat |
154 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
32179746 |
ctcgagaagcgaat |
32179733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University