View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_387 (Length: 218)
Name: NF8518A_low_387
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_387 |
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| [»] chr8 (3 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 218
Target Start/End: Original strand, 7946986 - 7947197
Alignment:
| Q |
7 |
caactgtcgttgcattccacttgtactagctggaggaaactgcgtagatccatcatctccaactatcacgaagatggttgagaaacatgctaacttatgt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7946986 |
caactgtcgttgcattccacttgtactagctggaggaaactgcgtagatccatcatctccaactatcacgaagatggttgagaaacatgctaacttatgt |
7947085 |
T |
|
| Q |
107 |
caatctcatgctgattgcacgaagaaaggaagtggtagcttttgtgctcgttatcctaatcctgatatcgaatatggatggggtttttcctcaaatagta |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
7947086 |
caatctcatgctgattgcacgaagaaaggaagtggtagcttttgtgctcgttatcctaatcctgatatcaaatatggatggtgtttttcctcaaatagta |
7947185 |
T |
|
| Q |
207 |
aagcacaagaag |
218 |
Q |
| |
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|||||||||||| |
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| T |
7947186 |
aagcacaagaag |
7947197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 7941442 - 7941646
Alignment:
| Q |
14 |
cgttgcattccacttgtactagctggaggaaactgcgtagatccatcatctccaactatcacgaagatggttgagaaacatgctaacttatgtcaatctc |
113 |
Q |
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||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7941442 |
cgttgcattcctgttatactaattggaggaaactgcgtagatccatcatctccaactatcacgaagatggttgagaaacatgctaacttatgtcaatctc |
7941541 |
T |
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| Q |
114 |
atgctgattgcacgaagaaaggaagtggtagcttttgtgctcgttatcctaatcctgatatcgaatatggatggggtttttcctcaaatagtaaagcaca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||| |
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| T |
7941542 |
atgctgattgcacgaagaaaggaagtggtagcttttgtgctcgttatcctaatcctgatatcgaatatggatggtgtttttcctcaagcagtagagcaca |
7941641 |
T |
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| Q |
214 |
agaag |
218 |
Q |
| |
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||||| |
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| T |
7941642 |
agaag |
7941646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 54 - 198
Target Start/End: Original strand, 7950451 - 7950595
Alignment:
| Q |
54 |
atccatcatctccaactatcacgaagatggttgagaaacatgctaacttatgtcaatctcatgctgattgcacgaagaaaggaagtggtagcttttgtgc |
153 |
Q |
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||||||||||||||||| | | ||||||||||||| ||||| ||||||||||||| ||||| ||||||||||||||||| | |||||| ||||||||||| |
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| T |
7950451 |
atccatcatctccaactgttatgaagatggttgaggaacatcctaacttatgtcagtctcacgctgattgcacgaagaaggaaagtggaagcttttgtgc |
7950550 |
T |
|
| Q |
154 |
tcgttatcctaatcctgatatcgaatatggatggggtttttcctc |
198 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
7950551 |
ccgttatcctaatcctgatatcgaacatggatggtgtttttcctc |
7950595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 57 - 218
Target Start/End: Complemental strand, 6803130 - 6802969
Alignment:
| Q |
57 |
catcatctccaactatcacgaagatggttgagaaacatgctaacttatgtcaatctcatgctgattgcacgaagaaaggaagtggtagcttttgtgctcg |
156 |
Q |
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||||||| |||||| | | ||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||| || ||||| ||||| |
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| T |
6803130 |
catcatccccaactgttatgaagatggttgaggaacatcctaacttatgtcagtctcatgctgattgcacgaagaaaggaagtgggagtttttgcgctcg |
6803031 |
T |
|
| Q |
157 |
ttatcctaatcctgatatcgaatatggatggggtttttcctcaaatagtaaagcacaagaag |
218 |
Q |
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||||||||||| ||||||||||||||||||| ||||| |||| || |||||||||||||| |
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| T |
6803030 |
ttatcctaatcttgatatcgaatatggatggtgttttgcctctaactctaaagcacaagaag |
6802969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 76 - 187
Target Start/End: Complemental strand, 6785953 - 6785842
Alignment:
| Q |
76 |
gaagatggttgagaaacatgctaacttatgtcaatctcatgctgattgcacgaagaaaggaagtggtagcttttgtgctcgttatcctaatcctgatatc |
175 |
Q |
| |
|
||||||||| ||| ||||| |||| ||||| || ||||||| |||||| || ||||| |||||| || |||||||||||||||||||||||| ||||| |
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| T |
6785953 |
gaagatggtcgaggaacatcctaatttatgccagtctcatgttgattgtacaaagaagaaaagtgggagtttttgtgctcgttatcctaatcctaatatc |
6785854 |
T |
|
| Q |
176 |
gaatatggatgg |
187 |
Q |
| |
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|||||||||||| |
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| T |
6785853 |
gaatatggatgg |
6785842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 3e-22; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 90 - 199
Target Start/End: Original strand, 12128042 - 12128151
Alignment:
| Q |
90 |
aacatgctaacttatgtcaatctcatgctgattgcacgaagaaaggaagtggtagcttttgtgctcgttatcctaatcctgatatcgaatatggatgggg |
189 |
Q |
| |
|
||||| |||||||||||||| ||||||| || |||| ||||| |||||||| | |||||||||||||||| ||||| ||||||||||||||||||| | |
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| T |
12128042 |
aacatcctaacttatgtcaaactcatgccgagtgcatcaagaagggaagtggaaacttttgtgctcgttatgctaatgatgatatcgaatatggatggtg |
12128141 |
T |
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| Q |
190 |
tttttcctca |
199 |
Q |
| |
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|||| ||||| |
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| T |
12128142 |
ttttgcctca |
12128151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 76 - 198
Target Start/End: Original strand, 12110193 - 12110315
Alignment:
| Q |
76 |
gaagatggttgagaaacatgctaacttatgtcaatctcatgctgattgcacgaagaaaggaagtggtagcttttgtgctcgttatcctaatcctgatatc |
175 |
Q |
| |
|
||||||| | ||| ||||| |||||||||||||| ||||||| || |||| ||||| |||||||| | |||||||||||||||| ||||| ||||| || |
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|
| T |
12110193 |
gaagatgatcgaggaacatcctaacttatgtcaaactcatgccgagtgcatcaagaagggaagtgggaacttttgtgctcgttatgctaatgctgatgtc |
12110292 |
T |
|
| Q |
176 |
gaatatggatggggtttttcctc |
198 |
Q |
| |
|
|||||||| ||| ||||| |||| |
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| T |
12110293 |
gaatatgggtggtgttttgcctc |
12110315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 76 - 198
Target Start/End: Original strand, 12123864 - 12123986
Alignment:
| Q |
76 |
gaagatggttgagaaacatgctaacttatgtcaatctcatgctgattgcacgaagaaaggaagtggtagcttttgtgctcgttatcctaatcctgatatc |
175 |
Q |
| |
|
||||||| | ||| ||||| |||||||||| ||| |||||||||| ||| ||||| |||||||| | ||||||||| |||||| ||||| |||||||| |
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| T |
12123864 |
gaagatgatcgaggaacatcctaacttatgccaaactcatgctgaatgcttcaagaagggaagtggaaacttttgtgcccgttatgctaatgctgatatc |
12123963 |
T |
|
| Q |
176 |
gaatatggatggggtttttcctc |
198 |
Q |
| |
|
|||||||||||| ||||| |||| |
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| T |
12123964 |
gaatatggatggtgttttgcctc |
12123986 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 162
Target Start/End: Original strand, 25481717 - 25481803
Alignment:
| Q |
76 |
gaagatggttgagaaacatgctaacttatgtcaatctcatgctgattgcacgaagaaaggaagtggtagcttttgtgctcgttatcc |
162 |
Q |
| |
|
|||||||||||||||| || |||| ||||||| |||||| |||||||||| |||||||| ||||| || ||||||| |||||||| |
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| T |
25481717 |
gaagatggttgagaaatattctaaggtatgtcagtctcatactgattgcacaaagaaaggtagtgggagtttttgtggacgttatcc |
25481803 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 166
Target Start/End: Complemental strand, 30079803 - 30079714
Alignment:
| Q |
77 |
aagatggttgagaaacatgctaacttatgtcaatctcatgctgattgcacgaagaaaggaagtggtagcttttgtgctcgttatcctaat |
166 |
Q |
| |
|
|||| |||||| ||||| |||||||||| ||| |||| |||| ||||| |||||||| ||||| | ||||||||||||| ||||||| |
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| T |
30079803 |
aagaaggttgaagaacatcctaacttatgccaaactcacactgaatgcacaaagaaaggtagtgggaatttttgtgctcgttttcctaat |
30079714 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 198
Target Start/End: Complemental strand, 15129405 - 15129281
Alignment:
| Q |
74 |
acgaagatggttgagaaacatgctaacttatgtcaatctcatgctgattgcacgaagaaaggaagtggtagcttttgtgctcgttatcctaatcctgata |
173 |
Q |
| |
|
||||||||||| || ||||| | |||||||||||||| || ||||||| ||||| |||| ||| || || |||||||||||||||||| |||||| |
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| T |
15129405 |
acgaagatggtcgaagaacatcccaacttatgtcaatcccacatagattgcatcaagaagggaaatgggagtttctgtgctcgttatcctaattctgata |
15129306 |
T |
|
| Q |
174 |
tcgaatatggatggggtttttcctc |
198 |
Q |
| |
|
||||| |||| ||| ||||| |||| |
|
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| T |
15129305 |
tcgaacatggctggtgttttacctc |
15129281 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 15107794 - 15107734
Alignment:
| Q |
102 |
tatgtcaatctcatgctgattgcacgaagaaaggaagtggtagcttttgtgctcgttatcc |
162 |
Q |
| |
|
||||||||||||||| || ||||| || || |||||||| ||||| |||||||||||||| |
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|
| T |
15107794 |
tatgtcaatctcatgtcgaatgcaccaaaaagggaagtgggagcttctgtgctcgttatcc |
15107734 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 162
Target Start/End: Original strand, 9147274 - 9147340
Alignment:
| Q |
96 |
ctaacttatgtcaatctcatgctgattgcacgaagaaaggaagtggtagcttttgtgctcgttatcc |
162 |
Q |
| |
|
|||||||||| || |||||||| || |||| ||||||||||||||| |||||||| |||||| |||| |
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|
| T |
9147274 |
ctaacttatgccagtctcatgccgactgcaagaagaaaggaagtggaagcttttgcgctcgtaatcc |
9147340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 193
Target Start/End: Complemental strand, 5951147 - 5951050
Alignment:
| Q |
96 |
ctaacttatgtcaatctcatgctgattgcacgaagaaaggaagtggtagcttttgtgctcgttatcctaatcctgatatcgaatatggatggggtttt |
193 |
Q |
| |
|
||||| ||||||| ||||||| ||| |||| ||| || |||||||| ||||||||||||| || ||||| || |||| | || ||||| ||| ||||| |
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| T |
5951147 |
ctaacatatgtcactctcatgttgaatgcatgaacaagggaagtgggagcttttgtgctcattctcctattcttgatgttgattatggttggtgtttt |
5951050 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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