View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_388 (Length: 216)
Name: NF8518A_low_388
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_388 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 3216890 - 3216675
Alignment:
| Q |
1 |
caaatttatctcttccattcgatgatgttggccacggaactcacacggccagcacggctgctggaaggcttgtacagggggccaatgtcttcggcaacgc |
100 |
Q |
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| T |
3216890 |
caaatttatctcttccattcgatgatgttggccacggaactcacacggccagcacggctgctggaaggcttgtacagggggccaatgtcttcggcaacgc |
3216791 |
T |
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| Q |
101 |
taaaggtacggcaacaggcatggcaccagatgcacacttggcaatctacaaagtatgcagcagcagtggttgtcctgagagtgcaacattagcaggaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3216790 |
taaaggtacggcaacaggcatggcaccagatgcacacttggcaatctacaaagtatgcagcagcagtggttgtcctgagagtgcaacattagcaggaatg |
3216691 |
T |
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| Q |
201 |
gatgctgcagttgaag |
216 |
Q |
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| T |
3216690 |
gatgctgcagttgaag |
3216675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 2 - 214
Target Start/End: Complemental strand, 3208950 - 3208738
Alignment:
| Q |
2 |
aaatttatctcttccattcgatgatgttggccacggaactcacacggccagcacggctgctggaaggcttgtacagggggccaatgtcttcggcaacgct |
101 |
Q |
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||||| ||| ||||||| ||||||||||||||| ||||||||||| ||||||||||| |||||||||| || || || || |||||||| || || ||| |
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| T |
3208950 |
aaattcatcccttccatacgatgatgttggccatggaactcacacagccagcacggccgctggaaggcccgtgcaaggtgctaatgtctttggtaatgct |
3208851 |
T |
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| Q |
102 |
aaaggtacggcaacaggcatggcaccagatgcacacttggcaatctacaaagtatgcagcagcagtggttgtcctgagagtgcaacattagcaggaatgg |
201 |
Q |
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| T |
3208850 |
aatggtactgcaattggcatggcaccatatgcacacttggcaatttacaaagtatgcaacatctacggttgtactgaaagttcaatattagctggaatgg |
3208751 |
T |
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| Q |
202 |
atgctgcagttga |
214 |
Q |
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| T |
3208750 |
atgctgcagttga |
3208738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 214
Target Start/End: Complemental strand, 3202976 - 3202764
Alignment:
| Q |
2 |
aaatttatctcttccattcgatgatgttggccacggaactcacacggccagcacggctgctggaaggcttgtacagggggccaatgtcttcggcaacgct |
101 |
Q |
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||||| ||| ||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||| || | || || |||||||| || || || |
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| T |
3202976 |
aaattcatcccttccatacgattatgttggccacggaactcacacggccagcacggccgctggaaggcccgtgaaaggtgctaatgtctttggtaatgcc |
3202877 |
T |
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| Q |
102 |
aaaggtacggcaacaggcatggcaccagatgcacacttggcaatctacaaagtatgcagcagcagtggttgtcctgagagtgcaacattagcaggaatgg |
201 |
Q |
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|| ||||| |||| |||||||||||| |||||||||||||||| |||||||||||| || | ||||||| |||| |||| | |||||| ||||||| |
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| T |
3202876 |
aatggtactgcaattggcatggcaccatatgcacacttggcaatttacaaagtatgcggcgtctttggttgtgctgaaagtgtcatattagctggaatgg |
3202777 |
T |
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| Q |
202 |
atgctgcagttga |
214 |
Q |
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||| ||| ||||| |
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| T |
3202776 |
atgttgctgttga |
3202764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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