View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_389 (Length: 216)
Name: NF8518A_low_389
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_389 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 1426061 - 1425846
Alignment:
| Q |
1 |
tcatcaaacccatggatgggtggttgaactagacgaatgcctcgtgtgttttgtgtgattcgaaagtaccgttcatgttgaaagaannnnnnnatcgaac |
100 |
Q |
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| T |
1426061 |
tcatcaaacccatggatgggtggttgaactagacgaatgcctcgtgtgttttgtgtgattcgaaagtaccgttcacgttgaaagaatttttttatcgaac |
1425962 |
T |
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| Q |
101 |
atcaataaagctgatgatgtttggtggtaaacaatcagcacaaacataaattaagcatagtagatatgaggaagttgtgttcgatttatagtaagattag |
200 |
Q |
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| T |
1425961 |
atcaataaagctgatgatgtttggtggtaaacaaccagcaaaaacataaattaagcatagtagatatgaggacgttgtgttggatgtatagtaagattag |
1425862 |
T |
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| Q |
201 |
gcgggatagaattaga |
216 |
Q |
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| T |
1425861 |
acggaatagaattaga |
1425846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 1448137 - 1447936
Alignment:
| Q |
16 |
atgggtggttgaactagacgaatgcctcgtgtgttttgtgtgattcgaaagtaccgttca--tgttgaaagaannnnnnnatcgaacatcaataaagctg |
113 |
Q |
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| T |
1448137 |
atgggtggttgaaatggaggaatgcctcgtgtgttttatgtgatgcgaaagtactactcacgtgttgaaataaattttt-atcgaacatcaataaaactg |
1448039 |
T |
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| Q |
114 |
atgatgtttggtggtaaacaatcagcacaaacataaattaagcatagtagatatgaggaagttgtgttcgatttatagtaagattaggcgggatagaatt |
213 |
Q |
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| T |
1448038 |
atgatgtttggtggtaaacaaccaacacaaacataaattaagcataatagatatgaagaagttgtgttggatgtgtagtaagactagaggggataaaatt |
1447939 |
T |
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| Q |
214 |
aga |
216 |
Q |
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||| |
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| T |
1447938 |
aga |
1447936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 1470512 - 1470464
Alignment:
| Q |
116 |
gatgtttggtggtaaacaatcagcacaaacataaattaagcatagtaga |
164 |
Q |
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| T |
1470512 |
gatgtttggtggtaagcaaccaacacaaacataaattaagcatagtaga |
1470464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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