View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_39 (Length: 420)
Name: NF8518A_low_39
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 7 - 410
Target Start/End: Original strand, 4235918 - 4236321
Alignment:
| Q |
7 |
gctgaaaccgccgcgacaaaatttataacaagtgctgccacattcactgttaattgaaattgaatgaatttttgaatgttgttgtaaacacatcttcccc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4235918 |
gctgaaaccgccgcgacaaaatttataacaagtgctgccacattcactgttaattgaaattgaatgaatttttgaatgttgttgtaaacacatcttcccc |
4236017 |
T |
|
| Q |
107 |
aatttataactgttactatagatgcaaaattgtcatctaatataacaatatctgaactctcttttgctacttcagtaccttgaattcccattgaaagtcc |
206 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4236018 |
aatttataactgttacaatagatgcaaaattgtcatctaatataacaatatctgaactctcttttgctacttcagtaccttgaattcccattgaaagtcc |
4236117 |
T |
|
| Q |
207 |
tatatcagcgtctttcaatgccggtgcatcgtttgttccatctccagttacagcaactacatgacctttttgttttaagcattgtaccattagaagttta |
306 |
Q |
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|||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4236118 |
aatatcagcttctttcaatgctggtgcatcgtttgttccgtctccggttacagcaactacatgacctttttgttttaagcattgtaccattagaagttta |
4236217 |
T |
|
| Q |
307 |
tcaaaaggagaagaccttgccatcacagatattttctcaactttcgccaccctctcttcgtgtgtgaagttacgaaattgttcaccttcaaccactgttt |
406 |
Q |
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||||| |||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4236218 |
tcaaatggagaagatcttgccatcacagagattttctcaactttcgccaacctctcttcgtgtgtgaagttacgaaattgttcgccttcaaccactgttt |
4236317 |
T |
|
| Q |
407 |
catc |
410 |
Q |
| |
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|||| |
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| T |
4236318 |
catc |
4236321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 30441396 - 30441333
Alignment:
| Q |
164 |
tctcttttgctacttcagtaccttgaattcccattgaaagtcctatatcagcgtctttcaatgc |
227 |
Q |
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|||||||||| ||||| ||||||||||||||||| |||| ||| ||| |||| ||| ||||||| |
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| T |
30441396 |
tctcttttgcaacttcggtaccttgaattcccatggaaattccaataccagcttctatcaatgc |
30441333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 7 - 411
Target Start/End: Original strand, 6185042 - 6185446
Alignment:
| Q |
7 |
gctgaaaccgccgcgacaaaatttataacaagtgctgccacattcactgttaattgaaattgaatgaatttttgaatgttgttgtaaacacatcttcccc |
106 |
Q |
| |
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|||||||||||||| || ||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6185042 |
gctgaaaccgccgcaacgaaattgataacaagggctgccacattcactgttagttgaaattgaatgaatttttgaatgttgttgtaaacacatcttcccc |
6185141 |
T |
|
| Q |
107 |
aatttataactgttactatagatgcaaaattgtcatctaatataacaatatctgaactctcttttgctacttcagtaccttgaattcccattgaaagtcc |
206 |
Q |
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| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6185142 |
agtttaacactgttacgatagatgcaaaattgtcatctaatataacaatatctgaactctcttttgcaacttcagtaccttgaattcccattgaaagtcc |
6185241 |
T |
|
| Q |
207 |
tatatcagcgtctttcaatgccggtgcatcgtttgttccatctccagttacagcaactacatgacctttttgttttaagcattgtaccattagaagttta |
306 |
Q |
| |
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||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6185242 |
gatatcggcttctttcaatgccggtgcatcgtttgttccatctcctgttacagcaactacatgacctttttgttttaagcattgaaccattagaagtttg |
6185341 |
T |
|
| Q |
307 |
tcaaaaggagaagaccttgccatcacagatattttctcaactttcgccaccctctcttcgtgtgtgaagttacgaaattgttcaccttcaaccactgttt |
406 |
Q |
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||||| ||||| || |||||||||||| ||||||| ||||| || | | ||||||||||| || ||||| ||||||||||| ||||||||||| |||| |
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| T |
6185342 |
tcaaatggagatgatcttgccatcacacatattttttcaaccttttctaatctctcttcgtgcgtaaagttgcgaaattgttcgccttcaaccaccgttt |
6185441 |
T |
|
| Q |
407 |
catct |
411 |
Q |
| |
|
||||| |
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|
| T |
6185442 |
catct |
6185446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 26 - 245
Target Start/End: Original strand, 19592829 - 19593039
Alignment:
| Q |
26 |
aatttataacaagtgctgccacattcactgttaattgaaattgaatgaatttttgaatgttgttgtaaacacatcttccccaatttataactgttactat |
125 |
Q |
| |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
19592829 |
aattgataacaagtgctgccacattcact---------aattgaatgaatttttgaatgttgttgtaaacacatcttccccaatttaaaattgttactat |
19592919 |
T |
|
| Q |
126 |
agatgcaaaattgtcatctaatataacaatatctgaactctcttttgctacttcagtaccttgaattcccattgaaagtcctatatcagcgtctttcaat |
225 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||| |||| |||||| | |||| ||| ||||||| | |
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| T |
19592920 |
agatgcaaaattgtcatctaatataacaatatctgagctctcttttgcaacttcggtaccttgaatttccatggaaagttcaatattagcttctttcagt |
19593019 |
T |
|
| Q |
226 |
gccggtgcatcgtttgttcc |
245 |
Q |
| |
|
|| | |||||| ||| |||| |
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| T |
19593020 |
gctgatgcatcatttcttcc |
19593039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 28 - 305
Target Start/End: Original strand, 38356883 - 38357160
Alignment:
| Q |
28 |
tttataacaagtgctgccacattcactgttaattgaaattgaatgaatttttgaatgttgttgtaaacacatcttccccaatttataactgttactatag |
127 |
Q |
| |
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||||| ||||||||||| ||||||||||||| |||||| ||||| ||||| || |||||||||||||||||||||||||| ||| ||| ||| | | || |
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| T |
38356883 |
tttatcacaagtgctgcaacattcactgttagttgaaactgaataaatttctggatgttgttgtaaacacatcttccccaccttaaaacagttgcaacag |
38356982 |
T |
|
| Q |
128 |
atgcaaaattgtcatctaatataacaatatctgaactctcttttgctacttcagtaccttgaattcccattgaaagtcctatatcagcgtctttcaatgc |
227 |
Q |
| |
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| || ||||| ||||| || || ||||| ||||| ||||| || ||||| || ||||| |||||||| ||||||||||||||||| ||||| || || |
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| T |
38356983 |
aattgaagttgtcgtctaagatgacgatatcggaactttctttggcgacttcggttccttggattcccatagaaagtcctatatcagcttcttttaaggc |
38357082 |
T |
|
| Q |
228 |
cggtgcatcgtttgttccatctccagttacagcaactacatgacctttttgttttaagcattgtaccattagaagttt |
305 |
Q |
| |
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|||||||||||||| || || || || || ||||||||||||||||| | | |||||||||| ||||| | |||||| |
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| T |
38357083 |
aggtgcatcgtttgtgccgtcgcctgtgaccgcaactacatgacctttctttcttaagcattgcaccatcaaaagttt |
38357160 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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