View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_397 (Length: 213)
Name: NF8518A_low_397
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_397 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 6129978 - 6130168
Alignment:
| Q |
18 |
ttttagtaataaaataaaaatataatggtctttgcagatttgatggaaaaagtttcttaacaaaattgaagggaaaacaaatcatgtttattggagattc |
117 |
Q |
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| T |
6129978 |
ttttagtaataaaataaaaatataatggtctttgcagatttgatggacaaagtttcttaacaaaattgaagggaaaacaaatcatgtttattggagattc |
6130077 |
T |
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| Q |
118 |
agtgagtctaaaccaatggcagtcacttatatgcttgcttcattctgctgtacctaaagctaatataatacaacagggtggtgatcccatt |
208 |
Q |
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| T |
6130078 |
agtgagtctaaaccaatggcagtcacttatatgcttgcttcattctgctgtacctaaagctaatataatacaacagggtggtgatcccatt |
6130168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 46 - 207
Target Start/End: Original strand, 6136859 - 6137020
Alignment:
| Q |
46 |
tctttgcagatttgatggaaaaagtttcttaacaaaattgaagggaaaacaaatcatgtttattggagattcagtgagtctaaaccaatggcagtcactt |
145 |
Q |
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| T |
6136859 |
tctttgcagatttgacggaaaaagtttcttgacaaaattgaaggggaaacaaataatgtttattggagattcaataagtcgaaaccaaaggcaatcactt |
6136958 |
T |
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| Q |
146 |
atatgcttgcttcattctgctgtacctaaagctaatataatacaacagggtggtgatcccat |
207 |
Q |
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| T |
6136959 |
gtatgtttgcttcattctgctgtaccacaagctagagtaataaaacagggttctgatcccat |
6137020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 46 - 207
Target Start/End: Complemental strand, 13285742 - 13285581
Alignment:
| Q |
46 |
tctttgcagatttgatggaaaaagtttcttaacaaaattgaagggaaaacaaatcatgtttattggagattcagtgagtctaaaccaatggcagtcactt |
145 |
Q |
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| T |
13285742 |
tctttgcagatttgacggaaaaagtttcttgacaaaatttaaggggaaacaaatcatgtttattggagattcaataagtcgaaaccaaaggcaatcactt |
13285643 |
T |
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| Q |
146 |
atatgcttgcttcattctgctgtacctaaagctaatataatacaacagggtggtgatcccat |
207 |
Q |
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|||| |||||||||||||||||||| |||||| ||||| |||||||| ||||||||| |
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| T |
13285642 |
gtatgtttgcttcattctgctgtaccacaagctagagtaataaaacagggttctgatcccat |
13285581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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