View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8518A_low_399 (Length: 211)
Name: NF8518A_low_399
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_399 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 8349390 - 8349215
Alignment:
| Q |
20 |
tctttgtcatcttagaatctaatccaacattggaaaaatattggaaatcacatgaattgagttataagtaccctcaaattttataacataataattggat |
119 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8349390 |
tctttgtcatcttagtatctaatccaacattggaaaaatattggaaatcacatgaattgagctataagtaccctcaaattttataacataataattggat |
8349291 |
T |
|
| Q |
120 |
gagtta-tctttccagcttcgggtagacatcgattgtagtcgctgaatgcatctccatctgccacaccatggatat |
194 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8349290 |
gagttattctttccagctttgggtagacatcgattgtagtcgctgaatgcatttccatctgccacaccatggatat |
8349215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 8482899 - 8483071
Alignment:
| Q |
20 |
tctttgtcatcttagaatctaatccaacattggaaaaatattggaaatcacatgaattgagttataagtaccctcaaattttataacataataattggat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
8482899 |
tctttgtcatcttagaatctaatccaacattggaaacatattggaaatcacataaattgagttataagtaccctcaaattttagaacataataattgaat |
8482998 |
T |
|
| Q |
120 |
gagtta-tctttccagcttcgggtagacatcgattgtagtcgctgaatgcatctccatctgccacaccatgga |
191 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||| |||||||||||||||| |
|
|
| T |
8482999 |
gagttattctttccagctccgggtagacatcgattggagtcggtgaatgcatctctctctgccacaccatgga |
8483071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 191
Target Start/End: Complemental strand, 8355443 - 8355266
Alignment:
| Q |
20 |
tctttgtcatcttagaatctaatccaacattggaaaaatattggaaatcacatgaattgagttataagt--------accctcaaattttataacataat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||| |||||||||||||| |||||||| |
|
|
| T |
8355443 |
tctttgtcatcttagaatctaatccaacattggaaacatattggaaatcacataaattga---ataagttaatcgaaaccctcaaattttagaacataat |
8355347 |
T |
|
| Q |
112 |
aattggatgagttat-ctttccagcttcgggtagacatcgattgtagtcgctgaatgcatctccatctgccacaccatgga |
191 |
Q |
| |
|
|||||||| |||||| |||||||||| | ||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
8355346 |
aattggataagttattctttccagctccaggtagacatcgattggagacgctgaatgcatctccatctgccacaccatgga |
8355266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 8531843 - 8531790
Alignment:
| Q |
32 |
tagaatctaatccaacattggaaaaatattggaaatcacatgaattgagttata |
85 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||| | ||||||||||||| |
|
|
| T |
8531843 |
tagaatctaatccaacattggaaaaatactagaaatcttaggaattgagttata |
8531790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 8351865 - 8351801
Alignment:
| Q |
21 |
ctttgtcatcttagaatctaatccaacattggaaaaatattggaaatcacatgaattgagttata |
85 |
Q |
| |
|
||||||| || || ||||||||||||||||| ||||||| | ||||| ||| ||||||||||||| |
|
|
| T |
8351865 |
ctttgtcgtcatataatctaatccaacattgtaaaaataatagaaattacaggaattgagttata |
8351801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 8357020 - 8356967
Alignment:
| Q |
32 |
tagaatctaatccaacattggaaaaatattggaaatcacatgaattgagttata |
85 |
Q |
| |
|
||||||||||| |||||||| ||||||| | ||||| ||| ||||||||||||| |
|
|
| T |
8357020 |
tagaatctaattcaacattgtaaaaatactagaaattacaggaattgagttata |
8356967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 191
Target Start/End: Original strand, 1169525 - 1169588
Alignment:
| Q |
128 |
tttccagcttcgggtagacatcgattgtagtcgctgaatgcatctccatctgccacaccatgga |
191 |
Q |
| |
|
|||| ||||| || |||| |||||||| || ||||||||||||||||||||||||||| |||| |
|
|
| T |
1169525 |
tttcaagctttggctagagatcgattggagcggctgaatgcatctccatctgccacaccctgga |
1169588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 7287239 - 7287292
Alignment:
| Q |
32 |
tagaatctaatccaacattggaaaaatattggaaatcacatgaattgagttata |
85 |
Q |
| |
|
||||||||||||||| |||| ||||||| | ||||||| | ||||||||||||| |
|
|
| T |
7287239 |
tagaatctaatccaagattgtaaaaatagtagaaatcaaaggaattgagttata |
7287292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University