View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8518A_low_4 (Length: 631)

Name: NF8518A_low_4
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8518A_low_4
NF8518A_low_4
[»] chr7 (18 HSPs)
chr7 (8-304)||(15479708-15480005)
chr7 (8-321)||(15539514-15539832)
chr7 (13-321)||(15428845-15429158)
chr7 (13-321)||(15487240-15487553)
chr7 (13-321)||(15448385-15448686)
chr7 (384-611)||(15448080-15448310)
chr7 (8-221)||(16942077-16942291)
chr7 (384-584)||(15428567-15428770)
chr7 (384-584)||(15486962-15487165)
chr7 (423-612)||(15539234-15539429)
chr7 (423-509)||(15480079-15480171)
chr7 (384-448)||(16941878-16941942)
chr7 (439-524)||(15432026-15432111)
chr7 (439-524)||(15490381-15490466)
chr7 (555-612)||(16944932-16944989)
chr7 (555-607)||(15431930-15431982)
chr7 (554-607)||(15558420-15558473)
chr7 (484-524)||(15558512-15558552)
[»] scaffold1195 (1 HSPs)
scaffold1195 (554-612)||(1065-1123)
[»] chr8 (1 HSPs)
chr8 (418-452)||(16661131-16661165)


Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 304
Target Start/End: Original strand, 15479708 - 15480005
Alignment:
8 ttggtgtttcagtgtttctttgaacctttgacaatactctccttgtgctgacattcttgaacaacaatgatctttcaataaagttcctgttggagacttg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
15479708 ttggtgtttcagtgtttctttgaacctttgacaatactctcctggtgctgacattcttgaacaacaatgatctttcagtaaagttcctgttggagacttg 15479807  T
108 aaatggtttgtgttgtgggttggtagtggaagaggagggcttagtcttggtcattgagtgattggtatggtggatctcttgattgcaaagtgtatatggg 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
15479808 aaatggtttgtgttgtgggttggtagtggaagaggagggcttagtcttggtcattgagtgattggtatggtggatctcttgattgcaacgtgtatatggg 15479907  T
208 tgggtgatcaattaacagttacttttcttcttg-agatgagaaatgaaactgttgaagtagaaagtgtttagaagtgtgtttccaagagtggttttat 304  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
15479908 tgggtgatcaattaacagttacttttcttcttgaagataagaaatgaaactgttgaagtacaaagtgtttagaagtgtgtttccaagggtggttttat 15480005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 321
Target Start/End: Complemental strand, 15539832 - 15539514
Alignment:
8 ttggtgtttcagtgtttctttgaacctttgacaatactctccttgtgctgacattcttgaacaacaatgatctttcaataaagttcctgttggagacttg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
15539832 ttggtgtttcagtgtttctttgaacctttgacaatactctccttgtgctgacattcttgaacaacaatgatctttcagtaaagttcctgttggagacttg 15539733  T
108 aaatggtttgtgttgtgggttggtagtggaagaggagggcttagtcttggtcattgagtgattggtatggtggatctcttgattgcaaagtgtatatggg 207  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||| | |||||||||||| ||||||||||     
15539732 aaatggtttgtgttgtgggttcgtagtggaagaagagggcttagtcttggtcatttagtgattggtatggtgggtttcttgattgcaaggtgtatatggc 15539633  T
208 tgggtgatcaatt---aacagtta-cttttcttcttg-agatgagaaatgaaactgttgaagtagaaagtgtttagaagtgtgtttccaagagtggtttt 302  Q
    |||||||| ||||   |||||||| |||| ||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
15539632 tgggtgattaattagcaacagttatctttccttcttgaagataagaaatgaaactgttgaattagaaagtgtttagaagtgtgtttccaagggtggtttt 15539533  T
303 atttatagacaccagttat 321  Q
    |||||||||||||||||||    
15539532 atttatagacaccagttat 15539514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 321
Target Start/End: Complemental strand, 15429158 - 15428845
Alignment:
13 gtttcagtgtttctttgaacctttgacaatactctccttgtgctgacattcttgaacaacaatgatctttcaataaagttcctgttggagacttgaaatg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
15429158 gtttcagtgtttctttgaacctttgacaatactctccttgtgctgacattcttgaacaacaatgctctttcagtaaagttcctgttggagacttgaaatg 15429059  T
113 gtttgtgttgtgggttggtagtggaagaggagggcttagtcttggtcattgagtgattggtatggtggatctcttgattgcaaagtgtatatgggtgggt 212  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||| |||| | | |||||||||||||||||||||||| || |    
15429058 gtttgtgttgtgggttcgtagtggaagaagagggcttagtcttggtcatttagtgattggtttggtcggtttcttgattgcaaagtgtatatgggaggct 15428959  T
213 gatcaatt---aacagtt-acttttcttcttg-agatgagaaatgaaactgttgaagtagaaagtgtttagaagtgtgtttccaagagtggttttattta 307  Q
    ||| ||||   ||||||| ||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
15428958 gattaattagaaacagttaactttccttcttgaagataagaaatgaaactgttgaagtagaaagtgtttagaagtgtgtttccaagggtggttttattta 15428859  T
308 tagacaccagttat 321  Q
    |||| |||||||||    
15428858 tagataccagttat 15428845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 321
Target Start/End: Complemental strand, 15487553 - 15487240
Alignment:
13 gtttcagtgtttctttgaacctttgacaatactctccttgtgctgacattcttgaacaacaatgatctttcaataaagttcctgttggagacttgaaatg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
15487553 gtttcagtgtttctttgaacctttgacaatactctccttgtgctgacattcttgaacaacaatgctctttcagtaaagttcctgttggagacttgaaatg 15487454  T
113 gtttgtgttgtgggttggtagtggaagaggagggcttagtcttggtcattgagtgattggtatggtggatctcttgattgcaaagtgtatatgggtgggt 212  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||| |||| | | |||||||||||||||||||||||| || |    
15487453 gtttgtgttgtgggttcgtagtggaagaagagggcttagtcttggtcatttagtgattggtttggtcggtttcttgattgcaaagtgtatatgggaggct 15487354  T
213 gatcaatt---aacagtt-acttttcttcttg-agatgagaaatgaaactgttgaagtagaaagtgtttagaagtgtgtttccaagagtggttttattta 307  Q
    ||| ||||   ||||||| ||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
15487353 gattaattagaaacagttaactttccttcttgaagataagaaatgaaactgttgaagtagaaagtgtttagaagtgtgtttccaagggtggttttattta 15487254  T
308 tagacaccagttat 321  Q
    |||| |||||||||    
15487253 tagataccagttat 15487240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 13 - 321
Target Start/End: Complemental strand, 15448686 - 15448385
Alignment:
13 gtttcagtgtttctttgaacctttgacaatactctccttgtgctgacattcttgaacaacaatgatctttcaataaagttcctgttggagacttgaaatg 112  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
15448686 gtttcagtgtttatttgaacctttggcaatactctccttgtgctgacattcttgaacaacaatgctctttcagtaaagttcctgttggagacttgaaatg 15448587  T
113 gtttgtgttgtgggttggtagtggaagaggagggcttagtcttggtcattgagtgattggtatggtggatctcttgattgcaaagtgtatatgggtgggt 212  Q
    |||||||||||||||| ||||||||||| ||            ||||||| ||||||||||||||||| | |||||||||||||||||||||||| ||||    
15448586 gtttgtgttgtgggttcgtagtggaagaaga------------ggtcatttagtgattggtatggtgggtttcttgattgcaaagtgtatatgggagggt 15448499  T
213 gatcaatt---aacagtt-acttttcttcttg-agatgagaaatgaaactgttgaagtagaaagtgtttagaagtgtgtttccaagagtggttttattta 307  Q
    ||| ||||   ||||||| ||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
15448498 gattaattagcaacagttaactttccttcttgaagataagaaatgaaactgttgaagtagaaagtgtttagaagtgtgtttccaagggtggttttattta 15448399  T
308 tagacaccagttat 321  Q
    |||| |||||||||    
15448398 tagataccagttat 15448385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 384 - 611
Target Start/End: Complemental strand, 15448310 - 15448080
Alignment:
384 gttatataaacatggtttaataaaactctgctatgaaaaagtgctatagcattgttatagccgctatttcgtaatattttgtacgaaataaattagcatg 483  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
15448310 gttatataaacatggtttaataaaactctgctatgaaaaagtgctatagcagtgttatagccgctatttcgtaatattttgtacgaaatatattagcatg 15448211  T
484 gaaaaacaatgatttgcgtaatttctgcaatgcaatggtgataaaccgcc---tcagccacnnnnnnnaacttcatcatatgattttggcttgaattggt 580  Q
    ||||||||||||||||| |||||||| ||||||||||||||||| |||||   ||||||||       ||||||||||||||||||||||||||||||||    
15448210 gaaaaacaatgatttgcataatttctacaatgcaatggtgataagccgccgcctcagccactttttttaacttcatcatatgattttggcttgaattggt 15448111  T
581 actggaatttgtgttgtcagatggctataag 611  Q
    |||||||||||||||||| ||||||||||||    
15448110 actggaatttgtgttgtcggatggctataag 15448080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 16942291 - 16942077
Alignment:
8 ttggtgtttcagtgtttctttgaacctttgacaatactctccttgtgctgacattcttgaacaacaatgatctttcaataaagttcctgttggagacttg 107  Q
    |||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
16942291 ttggtgtttcagtgttactttgaacctttgacaatagtctcctggtgctgacattcttgaacaacaatgctctttcattaaagttcctgttggagacttg 16942192  T
108 aaatggtttgtgttgtgggttggtagtggaagaggagggcttagtcttggtcattgagtgattggtatggtggatctcttgattgc-aaagtgtatatgg 206  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||| |||||||||||||    
16942191 aaatggtttgtgttttgggttcgtagtggaagaggagggcttagtcttggtcatttagtgattggtatggtgggtttcttgattgcaaaagtgtatatgg 16942092  T
207 gtgggtgatcaatta 221  Q
     |||||||| |||||    
16942091 ctgggtgattaatta 16942077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 384 - 584
Target Start/End: Complemental strand, 15428770 - 15428567
Alignment:
384 gttatataaacatggtttaataaaactctgctatgaaaaagtgctatagcattgttatagccgctatttcgtaatattttgtacgaaataaattagcatg 483  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
15428770 gttatataaacatggtttaataaaactctgctatgaaaaagtgctatagcagtgttatagccgctatttcgtaatattttgtacgaaatatattagcatg 15428671  T
484 gaaaaacaatgatttgcgtaatttctgcaatgcaatggtgataaaccgcc---tcagccacnnnnnnnaacttcatcatatgattttggcttgaattggt 580  Q
    ||||||||||||||||| |||||||| ||||||||||||||||| |||||   ||||||||       ||||||||||||||||||||||||||||||||    
15428670 gaaaaacaatgatttgcataatttctacaatgcaatggtgataagccgccgcctcagccactttttttaacttcatcatatgattttggcttgaattggt 15428571  T
581 actg 584  Q
    ||||    
15428570 actg 15428567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 384 - 584
Target Start/End: Complemental strand, 15487165 - 15486962
Alignment:
384 gttatataaacatggtttaataaaactctgctatgaaaaagtgctatagcattgttatagccgctatttcgtaatattttgtacgaaataaattagcatg 483  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
15487165 gttatataaacatggtttaataaaactctgctatgaaaaagtgctatagcagtgttatagccgctatttcgtaatattttgtacgaaatatattagcatg 15487066  T
484 gaaaaacaatgatttgcgtaatttctgcaatgcaatggtgataaaccgcc---tcagccacnnnnnnnaacttcatcatatgattttggcttgaattggt 580  Q
    ||||||||||||||||| |||||||| ||||||||||||||||| |||||   ||||||||       ||||||||||||||||||||||||||||||||    
15487065 gaaaaacaatgatttgcataatttctacaatgcaatggtgataagccgccgcctcagccactttttttaacttcatcatatgattttggcttgaattggt 15486966  T
581 actg 584  Q
    ||||    
15486965 actg 15486962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 423 - 612
Target Start/End: Complemental strand, 15539429 - 15539234
Alignment:
423 agtgctatagcattgttatagccgctatttcgtaatattttgtacgaaataaattagcatggaaaaacaatgatttgcgtaatttctgcaatgcaatggt 522  Q
    |||||||||||| ||| |||| || |||||||||| ||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
15539429 agtgctatagcagtgtcatagtcgttatttcgtaaaattttgtacaaaataaattagcatagaaaaacaatgatttgggtaatttctgcaatgcaatggt 15539330  T
523 gata---aaccgcctcagccacnnnnnnnaact---tcatcatatgattttggcttgaattggtactggaatttgtgttgtcagatggctataagt 612  Q
    ||||    ||||||||||||||        | |   | | |||||||||||||||||||||||||||||||||  | |||||||||||||| ||||    
15539329 gatataccaccgcctcagccactatttaacaataaattagcatatgattttggcttgaattggtactggaattgtttttgtcagatggctacaagt 15539234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 423 - 509
Target Start/End: Original strand, 15480079 - 15480171
Alignment:
423 agtgctatagcattgttatagccgctatttcgtaatattttgtacgaaataaattagcat------ggaaaaacaatgatttgcgtaatttct 509  Q
    ||||||||||||  || ||||||| |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
15480079 agtgctatagcagcgtcatagccgttatttcgtaatattttgtacgaaataaattagcatagaaaaagaaaaacaatgatttgcgtaatttct 15480171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 384 - 448
Target Start/End: Complemental strand, 16941942 - 16941878
Alignment:
384 gttatataaacatggtttaataaaactctgctatgaaaaagtgctatagcattgttatagccgct 448  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||  ||||||||||||    
16941942 gttatataaacatggttaaataaaactctcctatgaaaaagtgctatagcagcgttatagccgct 16941878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 439 - 524
Target Start/End: Complemental strand, 15432111 - 15432026
Alignment:
439 tatagccgctatttcgtaatattttgtacgaaataaattagcatggaaaaacaatgatttgcgtaatttctgcaatgcaatggtga 524  Q
    ||||||||||||||||||||| ||||| | ||||||| || |    ||||||||||||||| |||| |||||||||||||||||||    
15432111 tatagccgctatttcgtaatactttgtgctaaataaagtatcgcaaaaaaacaatgatttgtgtaaattctgcaatgcaatggtga 15432026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 439 - 524
Target Start/End: Complemental strand, 15490466 - 15490381
Alignment:
439 tatagccgctatttcgtaatattttgtacgaaataaattagcatggaaaaacaatgatttgcgtaatttctgcaatgcaatggtga 524  Q
    ||||||||||||||||||||| ||||| | ||||||| || |    ||||||||||||||| |||| ||||| |||||||||||||    
15490466 tatagccgctatttcgtaatactttgtgctaaataaagtatcgcaaaaaaacaatgatttgtgtaaattctggaatgcaatggtga 15490381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 555 - 612
Target Start/End: Complemental strand, 16944989 - 16944932
Alignment:
555 atcatatgattttggcttgaattggtactggaatttgtgttgtcagatggctataagt 612  Q
    ||||| ||||||||| |||||||||| | ||||||||||||| |||||||||| ||||    
16944989 atcatctgattttggtttgaattggtgcaggaatttgtgttggcagatggctacaagt 16944932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 555 - 607
Target Start/End: Complemental strand, 15431982 - 15431930
Alignment:
555 atcatatgattttggcttgaattggtactggaatttgtgttgtcagatggcta 607  Q
    ||||| ||||||||| |||||||||| | ||||||||||||| ||||||||||    
15431982 atcatctgattttggtttgaattggtgcaggaatttgtgttggcagatggcta 15431930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 554 - 607
Target Start/End: Complemental strand, 15558473 - 15558420
Alignment:
554 catcatatgattttggcttgaattggtactggaatttgtgttgtcagatggcta 607  Q
    |||||| | ||||||| |||||||||| | ||||||||||||| ||||||||||    
15558473 catcatcttattttggtttgaattggtgcaggaatttgtgttggcagatggcta 15558420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 484 - 524
Target Start/End: Complemental strand, 15558552 - 15558512
Alignment:
484 gaaaaacaatgatttgcgtaatttctgcaatgcaatggtga 524  Q
    ||||| |||||||||| |||| |||||||||||||||||||    
15558552 gaaaatcaatgatttgtgtaaattctgcaatgcaatggtga 15558512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1195 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1195
Description:

Target: scaffold1195; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 554 - 612
Target Start/End: Complemental strand, 1123 - 1065
Alignment:
554 catcatatgattttggcttgaattggtactggaatttgtgttgtcagatggctataagt 612  Q
    |||||||||||||||| |||||||||| | ||||||||||||| || ||||||| ||||    
1123 catcatatgattttggtttgaattggtgcaggaatttgtgttggcatatggctacaagt 1065  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 418 - 452
Target Start/End: Complemental strand, 16661165 - 16661131
Alignment:
418 gaaaaagtgctatagcattgttatagccgctattt 452  Q
    ||||||||||||||| |||||||||||||||||||    
16661165 gaaaaagtgctatagtattgttatagccgctattt 16661131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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