View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_401 (Length: 209)
Name: NF8518A_low_401
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_401 |
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Alignment Details
Target: chr3 (Bit Score: 114; Significance: 5e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 17 - 178
Target Start/End: Complemental strand, 25152832 - 25152673
Alignment:
| Q |
17 |
tcaaatatatggagaataaaaatgtcttttgnnnnnnnngaaggatggagaaagacaatgtcaccacctaattgtgaaaatcaacttctatgaattaagt |
116 |
Q |
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| T |
25152832 |
tcaaatatatggagtataaaaatgtctttt--tttttttgaaggatggagaaagacaatgtcaccacctaattgtgaaaatctacttctatgaattaagt |
25152735 |
T |
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| Q |
117 |
tataggataaagacctacaacaagcagcgaagaaggaaactatgaataatttaagtcacaat |
178 |
Q |
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| T |
25152734 |
tgtaggataaagacctacaacaagcagcgaagaaggaaactacgaataatttaagtcacaat |
25152673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 25146966 - 25146900
Alignment:
| Q |
100 |
acttctatgaattaagttataggataaagacctacaacaagcagcgaag-aaggaaactatgaataa |
165 |
Q |
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| T |
25146966 |
acttctataaattatgttataggataaaaacctacaacaagcagcgaagaaaggaaactatgaataa |
25146900 |
T |
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