View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_406 (Length: 208)
Name: NF8518A_low_406
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_406 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 8 - 208
Target Start/End: Original strand, 30877815 - 30878015
Alignment:
| Q |
8 |
gcatctccaagaatatcataaccttccatttccatagcaaagtgaaaagagaaatgaaaaaggagagtcgtttgtggggaccaaacacaggagacaacct |
107 |
Q |
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| T |
30877815 |
gcatctccaaatatatcataaccttccatttccatagcaaagtgaaaagagaaatgaaaaaggagagttgtttgtggggaccaaacacaggagacaacct |
30877914 |
T |
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| Q |
108 |
tggaaacaatggaataaggagaggtgtttgttctgtgtcagagttgttttggagtgtgatagtgatgaaaatgacagtgtcagtgaacaagtgacagtag |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30877915 |
tggaaacaatggaataaggagaggtgtttgttctgtgtcagagttgttttggagtgtgatagtgatgaaaatgacagtgtcagtgaacaagtgacagtag |
30878014 |
T |
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| Q |
208 |
a |
208 |
Q |
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| T |
30878015 |
a |
30878015 |
T |
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