View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_418 (Length: 202)
Name: NF8518A_low_418
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_418 |
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Alignment Details
Target: chr7 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 19 - 180
Target Start/End: Complemental strand, 14621592 - 14621431
Alignment:
| Q |
19 |
ccatcatcggcgtcgtaagtcgctttttatttacttacaattctataaccgttttcagttatttttgtttataaccgtttcttacaatcnnnnnnnnagg |
118 |
Q |
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| T |
14621592 |
ccatcatcggcgtcgtaagtcgctttttatttacttacaattctataaccgttttcagttatttttgtttataaccgtttcttacaatcttttttttagg |
14621493 |
T |
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| Q |
119 |
gtgaagttgcaaaagctattatctgtatggaaatcgctgcgacgaaacttggtgttcatttc |
180 |
Q |
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| T |
14621492 |
gtgaagttgcaaaagctattatctgtatggaaatcgctgcgacgaaacttggtgttcttttc |
14621431 |
T |
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Target: chr5 (Bit Score: 130; Significance: 1e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 17708593 - 17708754
Alignment:
| Q |
19 |
ccatcatcggcgtcgtaagtcgctttttatttacttacaattctataaccgttttcagttatttttgtttataaccgtttcttacaatcnnnnnnnnagg |
118 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
17708593 |
ccatcatcggcgtcgtaagtcgctttttgtttacttacaattctataaccgttttcagttatttttgtttataaccgtttcttacaatcttttttttagg |
17708692 |
T |
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| Q |
119 |
gtgaagttgcaaaagctattatctgtatggaaatcgctgcgacgaaacttggtgttcatttc |
180 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17708693 |
gtgaagttgcaaaagctattatctgtatggaaatcgctgcgacgaaacttggtgttcttttc |
17708754 |
T |
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