View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8518A_low_42 (Length: 414)

Name: NF8518A_low_42
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8518A_low_42
NF8518A_low_42
[»] chr7 (28 HSPs)
chr7 (4-326)||(4856572-4856877)
chr7 (83-239)||(25432042-25432203)
chr7 (203-279)||(36647449-36647525)
chr7 (38-78)||(12930315-12930355)
chr7 (38-78)||(34012517-34012557)
chr7 (38-77)||(25950829-25950868)
chr7 (41-76)||(35888311-35888346)
chr7 (38-76)||(2290016-2290054)
chr7 (41-75)||(30534705-30534739)
chr7 (41-75)||(32759556-32759590)
chr7 (39-77)||(33381574-33381612)
chr7 (38-76)||(38736450-38736488)
chr7 (73-179)||(41830167-41830271)
chr7 (38-76)||(44547425-44547463)
chr7 (38-76)||(46415005-46415043)
chr7 (38-75)||(18751982-18752019)
chr7 (38-75)||(31803120-31803157)
chr7 (13-78)||(32814430-32814495)
chr7 (13-78)||(33858841-33858906)
chr7 (13-78)||(39871588-39871653)
chr7 (38-75)||(46148431-46148468)
chr7 (44-76)||(6799552-6799584)
chr7 (38-78)||(12616383-12616423)
chr7 (50-78)||(22991756-22991784)
chr7 (241-277)||(34510834-34510870)
chr7 (38-78)||(39135092-39135132)
chr7 (203-279)||(41830300-41830376)
chr7 (49-77)||(42541870-42541898)
[»] chr1 (21 HSPs)
chr1 (74-167)||(50038529-50038622)
chr1 (203-278)||(18705671-18705746)
chr1 (90-151)||(12436201-12436262)
chr1 (38-78)||(7763749-7763789)
chr1 (38-78)||(18237091-18237131)
chr1 (13-76)||(27037268-27037331)
chr1 (38-76)||(25509208-25509246)
chr1 (38-76)||(42276161-42276199)
chr1 (38-76)||(50937778-50937816)
chr1 (13-78)||(11741394-11741459)
chr1 (221-277)||(29849953-29850007)
chr1 (13-78)||(37951924-37951989)
chr1 (13-78)||(39497430-39497495)
chr1 (38-75)||(43456621-43456658)
chr1 (38-75)||(44530608-44530645)
chr1 (51-80)||(51422160-51422189)
chr1 (38-78)||(4389605-4389645)
chr1 (49-77)||(5766001-5766029)
chr1 (203-275)||(9908147-9908218)
chr1 (49-77)||(17483731-17483759)
chr1 (49-77)||(25283869-25283897)
[»] chr5 (21 HSPs)
chr5 (94-172)||(15531461-15531539)
chr5 (94-156)||(15531586-15531648)
chr5 (204-279)||(41951693-41951768)
chr5 (38-76)||(14571286-14571324)
chr5 (38-75)||(8145142-8145179)
chr5 (202-279)||(35309109-35309186)
chr5 (38-82)||(23260138-23260182)
chr5 (13-76)||(3028012-3028075)
chr5 (38-77)||(8949810-8949849)
chr5 (13-76)||(35547260-35547323)
chr5 (41-75)||(14570893-14570927)
chr5 (13-75)||(23286449-23286511)
chr5 (38-76)||(32147293-32147331)
chr5 (13-75)||(43060386-43060448)
chr5 (49-78)||(24857553-24857582)
chr5 (39-76)||(32964132-32964169)
chr5 (50-78)||(14649185-14649213)
chr5 (38-78)||(16926449-16926489)
chr5 (39-75)||(19571940-19571976)
chr5 (38-75)||(31507619-31507658)
chr5 (38-78)||(41418308-41418348)
[»] chr3 (31 HSPs)
chr3 (71-226)||(10744725-10744885)
chr3 (13-75)||(47008477-47008539)
chr3 (241-279)||(52737791-52737829)
chr3 (38-78)||(4759351-4759391)
chr3 (38-78)||(17699031-17699071)
chr3 (38-78)||(41392880-41392920)
chr3 (13-80)||(8321920-8321987)
chr3 (41-76)||(17589879-17589914)
chr3 (13-76)||(23700760-23700823)
chr3 (13-76)||(23719215-23719278)
chr3 (13-76)||(23737671-23737734)
chr3 (38-77)||(24087335-24087374)
chr3 (13-76)||(46845467-46845530)
chr3 (13-80)||(53361830-53361897)
chr3 (13-79)||(30819874-30819940)
chr3 (13-78)||(7181347-7181412)
chr3 (49-78)||(10015800-10015829)
chr3 (13-78)||(10656688-10656753)
chr3 (49-78)||(19897847-19897876)
chr3 (13-78)||(22103904-22103969)
chr3 (39-76)||(23776495-23776532)
chr3 (13-78)||(37728710-37728775)
chr3 (49-78)||(42755338-42755367)
chr3 (49-78)||(48902719-48902748)
chr3 (49-78)||(48904274-48904303)
chr3 (13-70)||(49127173-49127230)
chr3 (50-78)||(2993256-2993284)
chr3 (38-78)||(36317654-36317694)
chr3 (49-77)||(42801519-42801547)
chr3 (41-77)||(43686765-43686801)
chr3 (38-78)||(51284062-51284102)
[»] chr8 (26 HSPs)
chr8 (38-78)||(33980462-33980502)
chr8 (38-78)||(40784888-40784928)
chr8 (13-80)||(5774043-5774110)
chr8 (41-76)||(44021007-44021042)
chr8 (13-78)||(26625790-26625855)
chr8 (203-279)||(4676261-4676336)
chr8 (41-77)||(36408413-36408449)
chr8 (13-76)||(2152215-2152278)
chr8 (13-80)||(5162299-5162366)
chr8 (49-80)||(23688176-23688207)
chr8 (13-72)||(44580854-44580913)
chr8 (38-76)||(5784148-5784186)
chr8 (38-76)||(7683562-7683600)
chr8 (13-75)||(7758884-7758946)
chr8 (41-75)||(11482859-11482893)
chr8 (38-76)||(12802610-12802648)
chr8 (13-78)||(13153925-13153990)
chr8 (13-78)||(14584106-14584171)
chr8 (38-75)||(17069844-17069881)
chr8 (38-75)||(17578392-17578429)
chr8 (38-75)||(18641380-18641417)
chr8 (49-78)||(35179597-35179626)
chr8 (38-75)||(36786467-36786504)
chr8 (38-78)||(28572043-28572083)
chr8 (38-78)||(28579636-28579676)
chr8 (38-78)||(34568487-34568527)
[»] chr6 (20 HSPs)
chr6 (122-239)||(1136230-1136352)
chr6 (203-278)||(8655790-8655865)
chr6 (13-78)||(25045618-25045683)
chr6 (38-78)||(7772173-7772213)
chr6 (13-76)||(402596-402659)
chr6 (13-76)||(9388766-9388829)
chr6 (38-77)||(15498627-15498666)
chr6 (38-77)||(34915543-34915582)
chr6 (241-279)||(787437-787475)
chr6 (38-76)||(5457411-5457449)
chr6 (38-76)||(5576377-5576415)
chr6 (38-76)||(13901640-13901678)
chr6 (38-76)||(23604459-23604497)
chr6 (38-75)||(287414-287451)
chr6 (38-75)||(2090658-2090695)
chr6 (49-78)||(13321337-13321366)
chr6 (38-75)||(33487833-33487870)
chr6 (38-78)||(7847308-7847348)
chr6 (43-79)||(12143775-12143811)
chr6 (49-77)||(16122525-16122553)
[»] chr4 (32 HSPs)
chr4 (13-78)||(13498461-13498526)
chr4 (38-78)||(18003940-18003980)
chr4 (13-76)||(4415964-4416027)
chr4 (38-77)||(18882349-18882388)
chr4 (39-78)||(24073127-24073166)
chr4 (13-76)||(28501361-28501424)
chr4 (41-76)||(39797433-39797468)
chr4 (13-76)||(46481364-46481427)
chr4 (38-77)||(49793089-49793128)
chr4 (38-77)||(56432516-56432555)
chr4 (13-75)||(1859144-1859206)
chr4 (41-75)||(15452573-15452607)
chr4 (38-76)||(20455181-20455219)
chr4 (41-75)||(20761564-20761598)
chr4 (41-75)||(20767955-20767989)
chr4 (50-80)||(26889911-26889941)
chr4 (13-75)||(29520139-29520201)
chr4 (49-79)||(30050095-30050125)
chr4 (13-75)||(31937076-31937138)
chr4 (13-75)||(36990914-36990976)
chr4 (38-76)||(46949991-46950029)
chr4 (42-75)||(625970-626003)
chr4 (38-75)||(25124246-25124283)
chr4 (38-75)||(25708678-25708715)
chr4 (13-78)||(28298346-28298411)
chr4 (39-76)||(32899219-32899256)
chr4 (38-75)||(33988791-33988828)
chr4 (38-75)||(49373693-49373730)
chr4 (38-75)||(53564356-53564393)
chr4 (13-70)||(54676552-54676609)
chr4 (50-78)||(32112135-32112163)
chr4 (39-75)||(55563128-55563164)
[»] chr2 (17 HSPs)
chr2 (13-78)||(5664635-5664700)
chr2 (13-78)||(20643479-20643544)
chr2 (203-279)||(24038363-24038439)
chr2 (41-76)||(12620073-12620108)
chr2 (38-77)||(25624731-25624770)
chr2 (13-76)||(26322268-26322331)
chr2 (41-76)||(29830757-29830792)
chr2 (13-75)||(8912849-8912911)
chr2 (38-76)||(11865289-11865327)
chr2 (38-76)||(17665522-17665560)
chr2 (38-75)||(2060316-2060353)
chr2 (38-75)||(7116299-7116336)
chr2 (38-75)||(26334845-26334882)
chr2 (38-75)||(28566151-28566188)
chr2 (38-78)||(4408778-4408818)
chr2 (49-77)||(12890219-12890247)
chr2 (40-76)||(44017738-44017774)
[»] scaffold0025 (1 HSPs)
scaffold0025 (38-77)||(65637-65676)
[»] scaffold0674 (1 HSPs)
scaffold0674 (38-75)||(5151-5188)
[»] scaffold0549 (1 HSPs)
scaffold0549 (38-75)||(10182-10219)
[»] scaffold0240 (1 HSPs)
scaffold0240 (38-75)||(18497-18534)
[»] scaffold0237 (1 HSPs)
scaffold0237 (49-78)||(6620-6649)
[»] scaffold0161 (1 HSPs)
scaffold0161 (38-75)||(3438-3475)
[»] scaffold0107 (1 HSPs)
scaffold0107 (38-75)||(48654-48691)
[»] scaffold0039 (1 HSPs)
scaffold0039 (38-75)||(104061-104098)
[»] scaffold0163 (1 HSPs)
scaffold0163 (49-77)||(1457-1485)
[»] scaffold0023 (1 HSPs)
scaffold0023 (73-177)||(111613-111715)
[»] scaffold0020 (1 HSPs)
scaffold0020 (49-77)||(164212-164240)


Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 4 - 326
Target Start/End: Complemental strand, 4856877 - 4856572
Alignment:
Q  4 agcagagacgtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtattagagatataggtttagtggtatatta 103  Q
    |||| |||||||||||||||||||||        ||||||||||  | |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4856877 agcaaagacgtcttataaaaagggacaaaaaaaattctcaaaaagatattataattagggacggagatagtattagagatataggtttagtggtatatta 4856778  T
Q  104 gttctaataaatagtaccataaatagcttgtaaccactctattagtggaaactttcactcattttgtaatattcaaattctacaaagagctttgcaatat 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||    
T  4856777 gttctaataaatagtaccataaatagcttgtaaccactctatta-------------ctcattttgtaatattcaaattctacaaagagctttgcaatat 4856691  T
Q  204 ttctctcattccttctctggatgccaagttttataatatggtatcagagcaaatctggtattcaccttgaaggatacattttctcactttccctttcttc 303  Q
    ||||||||||||||||    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  4856690 ttctctcattccttct----atgccaagttttataatatggtatcagagcaattctggtattcatcttgaaggatacattttctcactttccctttcttc 4856595  T
Q  304 cttattctaattttctgttatga 326  Q
    |||||||||||||||||||||||    
T  4856594 cttattctaattttctgttatga 4856572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 83 - 239
Target Start/End: Original strand, 25432042 - 25432203
Alignment:
Q  83 tataggtttagtggtatattagttctaataaatagtaccataaatagcttgtaaccactctattagtggaaactttcactcattttgtaatattcaaatt 182  Q
    |||||| |||||||||||||||| |||||| ||||||| ||||||||||||||||||| | ||||||||  ||||||||||| || ||||||||||| ||    
T  25432042 tataggattagtggtatattagtcctaatagatagtactataaatagcttgtaaccaccccattagtgggcactttcactca-ttcgtaatattcaattt 25432140  T
Q  183 c------tacaaagagctttgcaatatttctctcattccttctctggatgccaagttttataa 239  Q
    |      || ||||| |||||| | |||||||||||||||||  ||||||||| |||| ||||    
T  25432141 ccatcaatataaagaactttgctacatttctctcattccttccatggatgccatgtttcataa 25432203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 203 - 279
Target Start/End: Complemental strand, 36647525 - 36647449
Alignment:
Q  203 tttctctcattccttctctggatgccaagttttataatatggtatcagagcaaatctggtattcaccttgaaggata 279  Q
    |||||||||||| |||  |||||  || ||||| ||||||||||||||||| ||||||||||||| |||||||||||    
T  36647525 tttctctcattctttcattggatatcatgttttctaatatggtatcagagctaatctggtattcatcttgaaggata 36647449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 12930355 - 12930315
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  12930355 ttctcaaaagagtcttataattagggacggaggtagtatta 12930315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 34012517 - 34012557
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  34012517 ttctcaaaagggtcttataattagggacggaggtagtatta 34012557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 25950868 - 25950829
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtatt 77  Q
    |||||||||| |||||||||||| ||||||||||||||||    
T  25950868 ttctcaaaaaggtcttataattaaggacggaggtagtatt 25950829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 41 - 76
Target Start/End: Complemental strand, 35888346 - 35888311
Alignment:
Q  41 tcaaaaatgtcttataattagggacggaggtagtat 76  Q
    ||||||| ||||||||||||||||||||||||||||    
T  35888346 tcaaaaaggtcttataattagggacggaggtagtat 35888311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 2290016 - 2290054
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  2290016 ttctcaaaagggtcttataattagggacggaggtagtat 2290054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 75
Target Start/End: Complemental strand, 30534739 - 30534705
Alignment:
Q  41 tcaaaaatgtcttataattagggacggaggtagta 75  Q
    |||||| ||||||||||||||||||||||||||||    
T  30534739 tcaaaagtgtcttataattagggacggaggtagta 30534705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 75
Target Start/End: Complemental strand, 32759590 - 32759556
Alignment:
Q  41 tcaaaaatgtcttataattagggacggaggtagta 75  Q
    ||||||| |||||||||||||||||||||||||||    
T  32759590 tcaaaaaggtcttataattagggacggaggtagta 32759556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 77
Target Start/End: Original strand, 33381574 - 33381612
Alignment:
Q  39 tctcaaaaatgtcttataattagggacggaggtagtatt 77  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  33381574 tctcaaaagggtcttataattagggacggaggtagtatt 33381612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 38736488 - 38736450
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    |||||||||| |||||||||||||||| |||||||||||    
T  38736488 ttctcaaaaaggtcttataattagggagggaggtagtat 38736450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 41830167 - 41830271
Alignment:
Q  73 gtattagagatataggtttagtggtatattagttctaataaatagtaccataaatagcttgtaaccactctattagtggaaactttcactcattttgtaa 172  Q
    ||||||||||||||| || ||| | |||||||| ||| || | ||||  ||||||| ||||||||||| | ||||| || ||||||  ||||||||||||    
T  41830167 gtattagagatatagatt-agtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagggaactttt-ctcattttgtaa 41830264  T
Q  173 tattcaa 179  Q
    |||||||    
T  41830265 tattcaa 41830271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 44547463 - 44547425
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  44547463 ttctcaaaaaggtcttataattagggacggagggagtat 44547425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 46415005 - 46415043
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  46415005 ttctcaaaatggtcttataattagggacggaggtagtat 46415043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 18751982 - 18752019
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    |||||||||  |||||||||||||||||||||||||||    
T  18751982 ttctcaaaagagtcttataattagggacggaggtagta 18752019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 31803120 - 31803157
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  31803120 ttctcaaaaagatcttataattagggacggaggtagta 31803157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 32814495 - 32814430
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||||||||||        |||||||||  |||||||||||||||||||||| |||||||    
T  32814495 gtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtatta 32814430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 33858841 - 33858906
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||||||||||        |||||||||  |||||||||||||||||||||| |||||||    
T  33858841 gtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtatta 33858906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 39871588 - 39871653
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||||||||||        |||||||||  |||||||||||||||||||||| |||||||    
T  39871588 gtcttataaaaagggacaaaaaaatttctcaaaagggtcttataattagggacggagggagtatta 39871653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 46148468 - 46148431
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  46148468 ttctcaaaaaggtcttatatttagggacggaggtagta 46148431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 6799552 - 6799584
Alignment:
Q  44 aaaatgtcttataattagggacggaggtagtat 76  Q
    |||| ||||||||||||||||||||||||||||    
T  6799552 aaaaggtcttataattagggacggaggtagtat 6799584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 12616383 - 12616423
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||  |||||||||| |||||||||||||||||||    
T  12616383 ttctcaaaagggtcttataataagggacggaggtagtatta 12616423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 78
Target Start/End: Original strand, 22991756 - 22991784
Alignment:
Q  50 tcttataattagggacggaggtagtatta 78  Q
    |||||||||||||||||||||||||||||    
T  22991756 tcttataattagggacggaggtagtatta 22991784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 277
Target Start/End: Original strand, 34510834 - 34510870
Alignment:
Q  241 atggtatcagagcaaatctggtattcaccttgaagga 277  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  34510834 atggtatcagagctaatctggtatccaccttgaagga 34510870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 39135132 - 39135092
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||  ||||| ||||||||||||||||||||||||    
T  39135132 ttctcaaaagggtcttgtaattagggacggaggtagtatta 39135092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 279
Target Start/End: Original strand, 41830300 - 41830376
Alignment:
Q  203 tttctctcattccttctctggatgccaagttttataatatggtatcagagcaaatctggtattcaccttgaaggata 279  Q
    ||||||||||||||||  |||||| || ||||  ||| ||||||| ||||| ||  |||||| ||||||||||||||    
T  41830300 tttctctcattccttccatggatgacatgtttcctaacatggtattagagctaacttggtatccaccttgaaggata 41830376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 77
Target Start/End: Original strand, 42541870 - 42541898
Alignment:
Q  49 gtcttataattagggacggaggtagtatt 77  Q
    |||||||||||||||||||||||||||||    
T  42541870 gtcttataattagggacggaggtagtatt 42541898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 74 - 167
Target Start/End: Original strand, 50038529 - 50038622
Alignment:
Q  74 tattagagatataggtttagtggtatattagttctaataaatagtaccataaatagcttgtaaccactctattagtggaaactttcactcattt 167  Q
    ||||||||||||| | |||||||||||||||| |||||| ||||||||| |||||||||||||| || | |||||||| |||||||||||||||    
T  50038529 tattagagatataagattagtggtatattagtcctaatagatagtaccaaaaatagcttgtaactaccccattagtgggaactttcactcattt 50038622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 278
Target Start/End: Complemental strand, 18705746 - 18705671
Alignment:
Q  203 tttctctcattccttctctggatgccaagttttataatatggtatcagagcaaatctggtattcaccttgaaggat 278  Q
    |||||||| ||||||   ||||||||| ||||| ||| ||||||||||||| |||||||||| |||||||||||||    
T  18705746 tttctctccttcctttcatggatgccatgttttctaacatggtatcagagctaatctggtatccaccttgaaggat 18705671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 90 - 151
Target Start/End: Original strand, 12436201 - 12436262
Alignment:
Q  90 ttagtggtatattagttctaataaatagtaccataaatagcttgtaaccactctattagtgg 151  Q
    ||||||| |||||||||||| |||||||||  |||||||||| |||||||| | ||||||||    
T  12436201 ttagtggcatattagttctagtaaatagtagtataaatagctagtaaccaccccattagtgg 12436262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 7763749 - 7763789
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  7763749 ttctcaaaagggtcttataattagggacggaggtagtatta 7763789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 18237131 - 18237091
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  18237131 ttctcaaaagagtcttataattagggacggaggtagtatta 18237091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 27037331 - 27037268
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    |||||||||||||||||        |||||||||  ||||||||||||||||||||||||||||    
T  27037331 gtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggaggtagtat 27037268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 25509246 - 25509208
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  25509246 ttctcaaaagggtcttataattagggacggaggtagtat 25509208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 42276161 - 42276199
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  42276161 ttctcaaaagggtcttataattagggacggaggtagtat 42276199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 50937816 - 50937778
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  50937816 ttctcaaaatggtcttataattagggacggaggtagtat 50937778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 11741459 - 11741394
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||||||||||        |||||||||  |||||||||||||||||||||| |||||||    
T  11741459 gtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtatta 11741394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 29850007 - 29849953
Alignment:
Q  221 tggatgccaagttttataatatggtatcagagcaaatctggtattcaccttgaagga 277  Q
    ||||||||| |||| |||| ||||||||||||||||  |||||| ||||||||||||    
T  29850007 tggatgccatgtttcataacatggtatcagagcaaa--tggtatccaccttgaagga 29849953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 37951924 - 37951989
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||||||||||        |||||||||  |||||||||||||||||||||| |||||||    
T  37951924 gtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtatta 37951989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 39497495 - 39497430
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||||||||||        |||||||||  |||||||||||||||||||||| |||||||    
T  39497495 gtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtatta 39497430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 43456621 - 43456658
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    |||||||||  |||||||||||||||||||||||||||    
T  43456621 ttctcaaaagggtcttataattagggacggaggtagta 43456658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 44530608 - 44530645
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  44530608 ttctcaaaaaagtcttataattaggaacggaggtagta 44530645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 80
Target Start/End: Complemental strand, 51422189 - 51422160
Alignment:
Q  51 cttataattagggacggaggtagtattaga 80  Q
    ||||||||||||||||||||||||||||||    
T  51422189 cttataattagggacggaggtagtattaga 51422160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 4389645 - 4389605
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||| ||||| ||||||||||||| ||||||||||||||||    
T  4389645 ttcttaaaaaggtcttataattagagacggaggtagtatta 4389605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 77
Target Start/End: Original strand, 5766001 - 5766029
Alignment:
Q  49 gtcttataattagggacggaggtagtatt 77  Q
    |||||||||||||||||||||||||||||    
T  5766001 gtcttataattagggacggaggtagtatt 5766029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 9908218 - 9908147
Alignment:
Q  203 tttctctcattccttctctggatgccaagttttataatatggtatcagagcaaatctggtattcaccttgaag 275  Q
    ||||||||||||||| | |||||  || ||||  ||| ||||||||||||| |||||||||| ||||||||||    
T  9908218 tttctctcattccttgt-tggatatcatgtttcctaacatggtatcagagctaatctggtatccaccttgaag 9908147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 77
Target Start/End: Complemental strand, 17483759 - 17483731
Alignment:
Q  49 gtcttataattagggacggaggtagtatt 77  Q
    |||||||||||||||||||||||||||||    
T  17483759 gtcttataattagggacggaggtagtatt 17483731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 77
Target Start/End: Complemental strand, 25283897 - 25283869
Alignment:
Q  49 gtcttataattagggacggaggtagtatt 77  Q
    |||||||||||||||||||||||||||||    
T  25283897 gtcttataattagggacggaggtagtatt 25283869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 94 - 172
Target Start/End: Complemental strand, 15531539 - 15531461
Alignment:
Q  94 tggtatattagttctaataaatagtaccataaatagcttgtaaccactctattagtggaaactttcactcattttgtaa 172  Q
    |||||||||||| |||||| ||||||| |||||||| |||||||||| | |||||||| ||||||||||||||||||||    
T  15531539 tggtatattagtcctaatagatagtactataaatagtttgtaaccaccccattagtgggaactttcactcattttgtaa 15531461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 94 - 156
Target Start/End: Complemental strand, 15531648 - 15531586
Alignment:
Q  94 tggtatattagttctaataaatagtaccataaatagcttgtaaccactctattagtggaaact 156  Q
    |||||||||||| |||||| ||||||| ||||||||||||||||||| | |||||||| ||||    
T  15531648 tggtatattagtcctaatagatagtactataaatagcttgtaaccacccaattagtgggaact 15531586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 279
Target Start/End: Complemental strand, 41951768 - 41951693
Alignment:
Q  204 ttctctcattccttctctggatgccaagttttataatatggtatcagagcaaatctggtattcaccttgaaggata 279  Q
    |||||||||||||||  ||||||||| ||||  ||| ||||||| ||||| |||||||||| | ||||||||||||    
T  41951768 ttctctcattccttccatggatgccatgtttcctaacatggtattagagctaatctggtatccgccttgaaggata 41951693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 14571324 - 14571286
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  14571324 ttctcaaaaatatcttataattagggacggaggtagtat 14571286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 8145142 - 8145179
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  8145142 ttctcaaaaatgttttataattagggacggaggtagta 8145179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 279
Target Start/End: Complemental strand, 35309186 - 35309109
Alignment:
Q  202 atttctctcattccttctctggatgccaagttttataatatggtatcagagcaaatctggtattcaccttgaaggata 279  Q
    |||| ||||||||||||  |||||  || ||||  ||| ||||||||||||| |||||||||| ||||||||||||||    
T  35309186 atttttctcattccttcattggatatcatgtttcctaacatggtatcagagctaatctggtatccaccttgaaggata 35309109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 23260138 - 23260182
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtattagaga 82  Q
    |||||||||  |||||||||||||||||||||||||||| |||||    
T  23260138 ttctcaaaagggtcttataattagggacggaggtagtataagaga 23260182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 3028075 - 3028012
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    |||||||||||||||||        |||||||||  ||||||||||||||||||||||||||||    
T  3028075 gtcttataaaaagggacaaatttttttctcaaaagggtcttataattagggacggaggtagtat 3028012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 8949849 - 8949810
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtatt 77  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  8949849 ttctcaaaagggtcttataattagggacggaggtagtatt 8949810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 35547323 - 35547260
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    |||||||||||||||||        ||||||||||  |||||||||||||||||||||||||||    
T  35547323 gtcttataaaaagggacaaaaaaaattctcaaaaaaatcttataattagggacggaggtagtat 35547260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 75
Target Start/End: Original strand, 14570893 - 14570927
Alignment:
Q  41 tcaaaaatgtcttataattagggacggaggtagta 75  Q
    ||||||| |||||||||||||||||||||||||||    
T  14570893 tcaaaaaggtcttataattagggacggaggtagta 14570927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 23286449 - 23286511
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    |||||||||||||||||        |||||||||  |||||||||||||||||||||||||||    
T  23286449 gtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggaggtagta 23286511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 32147331 - 32147293
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  32147331 ttctcaaaaaggtcttataattagggacggagggagtat 32147293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 43060386 - 43060448
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    |||||||||||||||||        |||||||||  |||||||||||||||||||||||||||    
T  43060386 gtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggaggtagta 43060448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 78
Target Start/End: Complemental strand, 24857582 - 24857553
Alignment:
Q  49 gtcttataattagggacggaggtagtatta 78  Q
    ||||||||||||||||||||||||||||||    
T  24857582 gtcttataattagggacggaggtagtatta 24857553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 32964169 - 32964132
Alignment:
Q  39 tctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  32964169 tctcaaaatggtcttataattagggacggaggtagtat 32964132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 78
Target Start/End: Complemental strand, 14649213 - 14649185
Alignment:
Q  50 tcttataattagggacggaggtagtatta 78  Q
    |||||||||||||||||||||||||||||    
T  14649213 tcttataattagggacggaggtagtatta 14649185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 16926489 - 16926449
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||  |||||||||||||||| |||||||||||||    
T  16926489 ttctcaaaagggtcttataattagggatggaggtagtatta 16926449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 19571940 - 19571976
Alignment:
Q  39 tctcaaaaatgtcttataattagggacggaggtagta 75  Q
    ||||||||  |||||||||||||||||||||||||||    
T  19571940 tctcaaaagggtcttataattagggacggaggtagta 19571976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 31507619 - 31507658
Alignment:
Q  38 ttctcaaaaatgtcttata--attagggacggaggtagta 75  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  31507619 ttctcaaaaatgtcttatataattagggacggaggtagta 31507658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 41418348 - 41418308
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    ||||||||||  ||||| |||||||||||||||||||||||    
T  41418348 ttctcaaaaagatcttacaattagggacggaggtagtatta 41418308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 71 - 226
Target Start/End: Original strand, 10744725 - 10744885
Alignment:
Q  71 tagtattagagatataggtttagtggtatattagttctaataaatagtaccataaatagcttgtaaccactctattagtggaaactttcactcattttgt 170  Q
    |||||||||||||||| | ||||||||||||||||  ||||| ||||||  |||||||||||| ||||||   ||||||||  | ||||||| | ||| |    
T  10744725 tagtattagagatatatgattagtggtatattagtcttaatatatagtagtataaatagcttgaaaccacctcattagtgggcaatttcact-aatttat 10744823  T
Q  171 aatattcaaattc------tacaaagagctttgcaatatttctctcattccttctctggatg 226  Q
    ||||||||| |||      ||||||||||||| | | |||||||||||||||||| ||||||    
T  10744824 aatattcaatttccatcaatacaaagagctttactacatttctctcattccttctatggatg 10744885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 47008477 - 47008539
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    |||||||||||||||||        ||||||||| ||||||||||||||||||||||||||||    
T  47008477 gtcttataaaaagggacaaaaaaatttctcaaaagtgtcttataattagggacggaggtagta 47008539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 279
Target Start/End: Complemental strand, 52737829 - 52737791
Alignment:
Q  241 atggtatcagagcaaatctggtattcaccttgaaggata 279  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  52737829 atggtatcagagcaaatctggtatccaccttgaaggata 52737791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 4759351 - 4759391
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  4759351 ttctcaaaagggtcttataattagggacggaggtagtatta 4759391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 17699031 - 17699071
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  17699031 ttctcaaaatggtcttataattagggacggaggtagtatta 17699071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 41392880 - 41392920
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  41392880 ttctcaaaagggtcttataattagggacggaggtagtatta 41392920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 8321987 - 8321920
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtattaga 80  Q
    |||||||||||||||||        |||||||||  ||||||||||||||||||||||||||| ||||    
T  8321987 gtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggaggtagtagtaga 8321920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 41 - 76
Target Start/End: Original strand, 17589879 - 17589914
Alignment:
Q  41 tcaaaaatgtcttataattagggacggaggtagtat 76  Q
    |||||| |||||||||||||||||||||||||||||    
T  17589879 tcaaaagtgtcttataattagggacggaggtagtat 17589914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 23700760 - 23700823
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    |||||||||||||||||        |||||||||| |||||||||||||||||||||| |||||    
T  23700760 gtcttataaaaagggacaaaaaaaattctcaaaaaggtcttataattagggacggagggagtat 23700823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 23719215 - 23719278
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    |||||||||||||||||        |||||||||| |||||||||||||||||||||| |||||    
T  23719215 gtcttataaaaagggacaaaaaaaattctcaaaaaggtcttataattagggacggagggagtat 23719278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 23737671 - 23737734
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    |||||||||||||||||        |||||||||| |||||||||||||||||||||| |||||    
T  23737671 gtcttataaaaagggacaaaaaaaattctcaaaaaggtcttataattagggacggagggagtat 23737734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 77
Target Start/End: Original strand, 24087335 - 24087374
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtatt 77  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  24087335 ttctcaaaagggtcttataattagggacggaggtagtatt 24087374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 46845467 - 46845530
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    |||||||||||||||||        |||||||||  ||||||||||||||||||||||||||||    
T  46845467 gtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggaggtagtat 46845530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 53361830 - 53361897
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtattaga 80  Q
    |||||||||||||||||        |||||||||  |||||||||||||||||||||| |||||||||    
T  53361830 gtcttataaaaagggacaaaaaaaattctcaaaatggtcttataattagggacggagggagtattaga 53361897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 30819940 - 30819874
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtattag 79  Q
    |||||||||||||||||        |||||||||  |||||||| ||||||||||||||||||||||    
T  30819940 gtcttataaaaagggacaattttttttctcaaaagggtcttatagttagggacggaggtagtattag 30819874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 7181412 - 7181347
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||||||||||        |||||||||  |||||||||||||||||||||| |||||||    
T  7181412 gtcttataaaaagggacaaaaaaatttctcaaaagggtcttataattagggacggagggagtatta 7181347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 78
Target Start/End: Original strand, 10015800 - 10015829
Alignment:
Q  49 gtcttataattagggacggaggtagtatta 78  Q
    ||||||||||||||||||||||||||||||    
T  10015800 gtcttataattagggacggaggtagtatta 10015829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 10656753 - 10656688
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||||||||||        |||||||||  ||||||||||||||| ||||||||||||||    
T  10656753 gtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattaggggcggaggtagtatta 10656688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 78
Target Start/End: Original strand, 19897847 - 19897876
Alignment:
Q  49 gtcttataattagggacggaggtagtatta 78  Q
    ||||||||||||||||||||||||||||||    
T  19897847 gtcttataattagggacggaggtagtatta 19897876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 22103904 - 22103969
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||||||||||        |||||||||  |||||||||||||||||||||| |||||||    
T  22103904 gtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtatta 22103969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 23776495 - 23776532
Alignment:
Q  39 tctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    |||||||||  |||||||||||||||||||||||||||    
T  23776495 tctcaaaaaaatcttataattagggacggaggtagtat 23776532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 37728775 - 37728710
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||||||||||        |||||||||  |||||||||||||||||||||| |||||||    
T  37728775 gtcttataaaaagggacaacaaatattctcaaaagggtcttataattagggacggagggagtatta 37728710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 78
Target Start/End: Complemental strand, 42755367 - 42755338
Alignment:
Q  49 gtcttataattagggacggaggtagtatta 78  Q
    ||||||||||||||||||||||||||||||    
T  42755367 gtcttataattagggacggaggtagtatta 42755338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 78
Target Start/End: Original strand, 48902719 - 48902748
Alignment:
Q  49 gtcttataattagggacggaggtagtatta 78  Q
    ||||||||||||||||||||||||||||||    
T  48902719 gtcttataattagggacggaggtagtatta 48902748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 78
Target Start/End: Original strand, 48904274 - 48904303
Alignment:
Q  49 gtcttataattagggacggaggtagtatta 78  Q
    ||||||||||||||||||||||||||||||    
T  48904274 gtcttataattagggacggaggtagtatta 48904303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 49127173 - 49127230
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggagg 70  Q
    |||||||||||||||||        |||||||||| ||||||||||||||||||||||    
T  49127173 gtcttataaaaagggacaaaaaaaattctcaaaaaggtcttataattagggacggagg 49127230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 78
Target Start/End: Complemental strand, 2993284 - 2993256
Alignment:
Q  50 tcttataattagggacggaggtagtatta 78  Q
    |||||||||||||||||||||||||||||    
T  2993284 tcttataattagggacggaggtagtatta 2993256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 36317654 - 36317694
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    ||||||||||  ||||||||||||| |||||||||||||||    
T  36317654 ttctcaaaaaaatcttataattaggaacggaggtagtatta 36317694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 77
Target Start/End: Complemental strand, 42801547 - 42801519
Alignment:
Q  49 gtcttataattagggacggaggtagtatt 77  Q
    |||||||||||||||||||||||||||||    
T  42801547 gtcttataattagggacggaggtagtatt 42801519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 43686765 - 43686801
Alignment:
Q  41 tcaaaaatgtcttataattagggacggaggtagtatt 77  Q
    ||||||| | |||||||||||||||||||||||||||    
T  43686765 tcaaaaaggccttataattagggacggaggtagtatt 43686801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 51284062 - 51284102
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||  |||||||||||||||||||||| |||||||    
T  51284062 ttctcaaaagggtcttataattagggacggagggagtatta 51284102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 33980502 - 33980462
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  33980502 ttctcaaaaaagtcttataattagggacggaggtagtatta 33980462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 40784928 - 40784888
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  40784928 ttctcaaaaaggtcttataattagggacggaggtagtatta 40784888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 5774110 - 5774043
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtattaga 80  Q
    |||||||||||||||||        |||||||||  ||||||||||||||||||||||||||||||||    
T  5774110 gtcttataaaaagggacaaaaaaaattctcaaaagagtcttataattagggacggaggtagtattaga 5774043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 76
Target Start/End: Complemental strand, 44021042 - 44021007
Alignment:
Q  41 tcaaaaatgtcttataattagggacggaggtagtat 76  Q
    ||||||||||||||||||||||||||||||||||||    
T  44021042 tcaaaaatgtcttataattagggacggaggtagtat 44021007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 26625855 - 26625790
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||||||||||        |||||||||| |||||||||||||||| |||||||||||||    
T  26625855 gtcttataaaaagggacaaatttttttctcaaaaaggtcttataattagggatggaggtagtatta 26625790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 279
Target Start/End: Original strand, 4676261 - 4676336
Alignment:
Q  203 tttctctcattccttctctggatgccaagttttataatatggtatcagagcaaatctggtattcaccttgaaggata 279  Q
    ||||||||||||||||  |||||  || ||||  ||||||||||||||||| || ||||||| ||||||||||||||    
T  4676261 tttctctcattccttcg-tggatatcatgtttcctaatatggtatcagagctaacctggtatccaccttgaaggata 4676336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 36408449 - 36408413
Alignment:
Q  41 tcaaaaatgtcttataattagggacggaggtagtatt 77  Q
    ||||||| |||||||||||||||||||||||||||||    
T  36408449 tcaaaaaggtcttataattagggacggaggtagtatt 36408413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 2152215 - 2152278
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    |||||||||||||||||        |||||||||  ||||||||||||||||||||||||||||    
T  2152215 gtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggaggtagtat 2152278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 5162366 - 5162299
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtattaga 80  Q
    |||||||||||||||||        |||||||||  ||||||||||||||||||||||||||| ||||    
T  5162366 gtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggaggtagtagtaga 5162299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 80
Target Start/End: Original strand, 23688176 - 23688207
Alignment:
Q  49 gtcttataattagggacggaggtagtattaga 80  Q
    ||||||||||||||||||||||||||||||||    
T  23688176 gtcttataattagggacggaggtagtattaga 23688207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 44580854 - 44580913
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggta 72  Q
    |||||||||||||||||        |||||||||| ||||||||||||||||||||||||    
T  44580854 gtcttataaaaagggacaaaaaaatttctcaaaaaggtcttataattagggacggaggta 44580913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 5784148 - 5784186
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  5784148 ttctcaaaaagatcttataattagggacggaggtagtat 5784186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 7683562 - 7683600
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  7683562 ttctcaaaaatgtcttataattaggaacagaggtagtat 7683600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 7758884 - 7758946
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    |||||||||||||||||        ||||||||| ||||||||||||||||||||||| ||||    
T  7758884 gtcttataaaaagggacaaaaaatattctcaaaagtgtcttataattagggacggagggagta 7758946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 75
Target Start/End: Complemental strand, 11482893 - 11482859
Alignment:
Q  41 tcaaaaatgtcttataattagggacggaggtagta 75  Q
    |||||| ||||||||||||||||||||||||||||    
T  11482893 tcaaaagtgtcttataattagggacggaggtagta 11482859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 12802648 - 12802610
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  12802648 ttctcaaaagggtcttataattagggacggaggtagtat 12802610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 13153990 - 13153925
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||||||||||        |||||||||  |||||||||||||||||||||| |||||||    
T  13153990 gtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtatta 13153925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 14584106 - 14584171
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||||||||||        |||||||||  |||||||||||||| |||||||||||||||    
T  14584106 gtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattaggaacggaggtagtatta 14584171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 17069844 - 17069881
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    |||||||||  |||||||||||||||||||||||||||    
T  17069844 ttctcaaaagggtcttataattagggacggaggtagta 17069881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 17578429 - 17578392
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    |||||||||  |||||||||||||||||||||||||||    
T  17578429 ttctcaaaagggtcttataattagggacggaggtagta 17578392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 18641380 - 18641417
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    |||||||||  |||||||||||||||||||||||||||    
T  18641380 ttctcaaaagggtcttataattagggacggaggtagta 18641417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 78
Target Start/End: Complemental strand, 35179626 - 35179597
Alignment:
Q  49 gtcttataattagggacggaggtagtatta 78  Q
    ||||||||||||||||||||||||||||||    
T  35179626 gtcttataattagggacggaggtagtatta 35179597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 36786504 - 36786467
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  36786504 ttctcaaaaaggtcttataattagggacggaggaagta 36786467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 28572083 - 28572043
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||  |||||||||||||||||||||| |||||||    
T  28572083 ttctcaaaagggtcttataattagggacggagggagtatta 28572043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 28579676 - 28579636
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||  |||||||||||||||||||||| |||||||    
T  28579676 ttctcaaaagggtcttataattagggacggagggagtatta 28579636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 34568527 - 34568487
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||  |||||||||||||||||||||| |||||||    
T  34568527 ttctcaaaagggtcttataattagggacggagggagtatta 34568487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 239
Target Start/End: Complemental strand, 1136352 - 1136230
Alignment:
Q  122 ataaatagcttgtaaccactctattagtggaaactttcactcattttgtaatattcaaattc------tacaaagagctttgcaatatttctctcattcc 215  Q
    ||||||||| |||| |||| | ||||||||| ||||||||||| |||||||||||||| |||      || |||||| ||||| ||||||||||||||||    
T  1136352 ataaatagcgtgtacccaccccattagtggacactttcactca-tttgtaatattcaatttccatcaatataaagagatttgctatatttctctcattcc 1136254  T
Q  216 ttctctggatgccaagttttataa 239  Q
    |||  |||||| || |||| ||||    
T  1136253 ttccatggatgtcatgtttgataa 1136230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 278
Target Start/End: Complemental strand, 8655865 - 8655790
Alignment:
Q  203 tttctctcattccttctctggatgccaagttttataatatggtatcagagcaaatctggtattcaccttgaaggat 278  Q
    |||||||| |||||||| ||||||||| ||||  ||| |||||||||||||  ||||||||  |||||||||||||    
T  8655865 tttctctccttccttctatggatgccatgtttcctaacatggtatcagagcttatctggtacccaccttgaaggat 8655790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 25045618 - 25045683
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||||||||||        |||||||||  ||||||||||||||||||||||||||||||    
T  25045618 gtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggaggtagtatta 25045683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 7772213 - 7772173
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  7772213 ttctcaaaagagtcttataattagggacggaggtagtatta 7772173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 402596 - 402659
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    |||||||||||||||||        |||||||||  ||||||||||||||||||||||||||||    
T  402596 gtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggaggtagtat 402659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 9388766 - 9388829
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    |||||||||||||||||        |||||||||| |||||||||||||||||||||| |||||    
T  9388766 gtcttataaaaagggacaaaaaaaattctcaaaaaggtcttataattagggacggagggagtat 9388829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 15498666 - 15498627
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtatt 77  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  15498666 ttctcaaaagggtcttataattagggacggaggtagtatt 15498627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 77
Target Start/End: Original strand, 34915543 - 34915582
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtatt 77  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  34915543 ttctcaaaagggtcttataattagggacggaggtagtatt 34915582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 279
Target Start/End: Original strand, 787437 - 787475
Alignment:
Q  241 atggtatcagagcaaatctggtattcaccttgaaggata 279  Q
    ||||||||||||||||| |||||| ||||||||||||||    
T  787437 atggtatcagagcaaatatggtatccaccttgaaggata 787475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 5457449 - 5457411
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  5457449 ttctcaaaaaggtcttataattagggacggagggagtat 5457411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 5576377 - 5576415
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    |||||||||| |||||||||||| |||||||||||||||    
T  5576377 ttctcaaaaacgtcttataattaaggacggaggtagtat 5576415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 13901678 - 13901640
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  13901678 ttctcaaaagggtcttataattagggacggaggtagtat 13901640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 23604497 - 23604459
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  23604497 ttctcaaaagggtcttataattagggacggaggtagtat 23604459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 287414 - 287451
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  287414 ttctcaaaaaggtcttataattagggacggagggagta 287451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 2090695 - 2090658
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    |||||||||  |||||||||||||||||||||||||||    
T  2090695 ttctcaaaagggtcttataattagggacggaggtagta 2090658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 78
Target Start/End: Original strand, 13321337 - 13321366
Alignment:
Q  49 gtcttataattagggacggaggtagtatta 78  Q
    ||||||||||||||||||||||||||||||    
T  13321337 gtcttataattagggacggaggtagtatta 13321366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 33487870 - 33487833
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  33487870 ttctcaaaaaggtcttataattagggacggagggagta 33487833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 7847308 - 7847348
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||  |||||||| |||||||||||||||||||||    
T  7847308 ttctcaaaagggtcttatatttagggacggaggtagtatta 7847348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 12143811 - 12143775
Alignment:
Q  43 aaaaatgtcttataattagggacggaggtagtattag 79  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  12143811 aaaagtgtcttataattagggacggagggagtattag 12143775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 77
Target Start/End: Original strand, 16122525 - 16122553
Alignment:
Q  49 gtcttataattagggacggaggtagtatt 77  Q
    |||||||||||||||||||||||||||||    
T  16122525 gtcttataattagggacggaggtagtatt 16122553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 13498461 - 13498526
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||||||||||        ||||||||||  |||||||||||||||||||||||||||||    
T  13498461 gtcttataaaaagggacaaacttttttctcaaaaacatcttataattagggacggaggtagtatta 13498526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 18003980 - 18003940
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||| || |||||||||||||||||||||||||||    
T  18003980 ttctcaaaaaagtgttataattagggacggaggtagtatta 18003940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 4416027 - 4415964
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    |||||||||||||||||        |||||||||  ||||||||||||||||||||||||||||    
T  4416027 gtcttataaaaagggacaaaaaacattctcaaaagggtcttataattagggacggaggtagtat 4415964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 18882388 - 18882349
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtatt 77  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  18882388 ttctcaaaaaggtcttataattagggacggagatagtatt 18882349  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 78
Target Start/End: Original strand, 24073127 - 24073166
Alignment:
Q  39 tctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  24073127 tctcaaaaaggtcttataattaaggacggaggtagtatta 24073166  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 28501361 - 28501424
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    |||||||||||||||||        |||||||||  ||||||||||||||||||||||||||||    
T  28501361 gtcttataaaaagggacaaaaaaatttctcaaaagggtcttataattagggacggaggtagtat 28501424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 41 - 76
Target Start/End: Complemental strand, 39797468 - 39797433
Alignment:
Q  41 tcaaaaatgtcttataattagggacggaggtagtat 76  Q
    ||||||| ||||||||||||||||||||||||||||    
T  39797468 tcaaaaaggtcttataattagggacggaggtagtat 39797433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 46481364 - 46481427
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    |||||||||||||||||        |||||||||| |||||||||||||||| |||||||||||    
T  46481364 gtcttataaaaagggacaagaaaaattctcaaaaaggtcttataattagggatggaggtagtat 46481427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 49793128 - 49793089
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtatt 77  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  49793128 ttctcaaaagggtcttataattagggacggaggtagtatt 49793089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 56432555 - 56432516
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtatt 77  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  56432555 ttctcaaaagggtcttataattagggacggaggtagtatt 56432516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 1859206 - 1859144
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    |||||||||||||||||        |||||||||| |||||||||||||||||||||| ||||    
T  1859206 gtcttataaaaagggacaaaaaaaattctcaaaaaggtcttataattagggacggagggagta 1859144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 75
Target Start/End: Complemental strand, 15452607 - 15452573
Alignment:
Q  41 tcaaaaatgtcttataattagggacggaggtagta 75  Q
    ||||||||||| |||||||||||||||||||||||    
T  15452607 tcaaaaatgtcatataattagggacggaggtagta 15452573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 20455181 - 20455219
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  20455181 ttctcaaaagggtcttataattagggacggaggtagtat 20455219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 75
Target Start/End: Complemental strand, 20761598 - 20761564
Alignment:
Q  41 tcaaaaatgtcttataattagggacggaggtagta 75  Q
    ||||||||| |||||||||||||||||||||||||    
T  20761598 tcaaaaatgacttataattagggacggaggtagta 20761564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 75
Target Start/End: Complemental strand, 20767989 - 20767955
Alignment:
Q  41 tcaaaaatgtcttataattagggacggaggtagta 75  Q
    ||||||||| |||||||||||||||||||||||||    
T  20767989 tcaaaaatgacttataattagggacggaggtagta 20767955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 80
Target Start/End: Original strand, 26889911 - 26889941
Alignment:
Q  50 tcttataattagggacggaggtagtattaga 80  Q
    |||||||||||||||||||||||||||||||    
T  26889911 tcttataattagggacggaggtagtattaga 26889941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 29520139 - 29520201
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    |||||||||||||||||        |||||||||  |||||||||||||||||||||||||||    
T  29520139 gtcttataaaaagggacaaatttttttctcaaaagggtcttataattagggacggaggtagta 29520201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 79
Target Start/End: Original strand, 30050095 - 30050125
Alignment:
Q  49 gtcttataattagggacggaggtagtattag 79  Q
    |||||||||||||||||||||||||||||||    
T  30050095 gtcttataattagggacggaggtagtattag 30050125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 31937138 - 31937076
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    |||||||||||||||||        |||||||||  |||||||||||||||||||||||||||    
T  31937138 gtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggaggtagta 31937076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 36990976 - 36990914
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    |||||||||||||||||        |||||||||| ||||||||||||| |||||||||||||    
T  36990976 gtcttataaaaagggacaaaaaaaattctcaaaaaggtcttataattagagacggaggtagta 36990914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 46950029 - 46949991
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  46950029 ttctcaaaagggtcttataattagggacggaggtagtat 46949991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 625970 - 626003
Alignment:
Q  42 caaaaatgtcttataattagggacggaggtagta 75  Q
    |||||| |||||||||||||||||||||||||||    
T  625970 caaaaaggtcttataattagggacggaggtagta 626003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 25124246 - 25124283
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    |||||||||  |||||||||||||||||||||||||||    
T  25124246 ttctcaaaagggtcttataattagggacggaggtagta 25124283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 25708678 - 25708715
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  25708678 ttctcaaaaaggtcttataattagggacggagggagta 25708715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 28298346 - 28298411
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||||||||||        |||||||||   |||||||||||||||||||||||||||||    
T  28298346 gtcttataaaaagggacaaaaaaaattctcaaaaggatcttataattagggacggaggtagtatta 28298411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 32899219 - 32899256
Alignment:
Q  39 tctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  32899219 tctcaaaagggtcttataattagggacggaggtagtat 32899256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 33988791 - 33988828
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  33988791 ttcttaaaaacgtcttataattagggacggaggtagta 33988828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 49373693 - 49373730
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    |||||||||  |||||||||||||||||||||||||||    
T  49373693 ttctcaaaagggtcttataattagggacggaggtagta 49373730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 53564356 - 53564393
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    |||||||||  |||||||||||||||||||||||||||    
T  53564356 ttctcaaaagggtcttataattagggacggaggtagta 53564393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 54676609 - 54676552
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggagg 70  Q
    |||||||||||||||||        |||||||||| ||||||||||||||||||||||    
T  54676609 gtcttataaaaagggacaaaaaaaattctcaaaaaggtcttataattagggacggagg 54676552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 78
Target Start/End: Complemental strand, 32112163 - 32112135
Alignment:
Q  50 tcttataattagggacggaggtagtatta 78  Q
    |||||||||||||||||||||||||||||    
T  32112163 tcttataattagggacggaggtagtatta 32112135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 55563128 - 55563164
Alignment:
Q  39 tctcaaaaatgtcttataattagggacggaggtagta 75  Q
    ||||||||  |||||||||||||||||||||||||||    
T  55563128 tctcaaaagggtcttataattagggacggaggtagta 55563164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 5664700 - 5664635
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||||||||||        |||||||||| |||||||||||||||||||||| |||||||    
T  5664700 gtcttataaaaagggacaaaaaaaattctcaaaaaggtcttataattagggacggagggagtatta 5664635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 20643544 - 20643479
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||||||||||        |||||||||| || |||||||||||||||||||||||||||    
T  20643544 gtcttataaaaagggacaacaaaaattctcaaaaaagtgttataattagggacggaggtagtatta 20643479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 279
Target Start/End: Original strand, 24038363 - 24038439
Alignment:
Q  203 tttctctcattccttctctggatgccaagttttataatatggtatcagagcaaatctggtattcaccttgaaggata 279  Q
    ||||||||||||||||  ||||||||| ||||| ||| |||||||||||||     |||||| ||||||||||||||    
T  24038363 tttctctcattccttccatggatgccatgttttctaacatggtatcagagcctggttggtatccaccttgaaggata 24038439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 41 - 76
Target Start/End: Original strand, 12620073 - 12620108
Alignment:
Q  41 tcaaaaatgtcttataattagggacggaggtagtat 76  Q
    ||||||||||| ||||||||||||||||||||||||    
T  12620073 tcaaaaatgtcatataattagggacggaggtagtat 12620108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 25624770 - 25624731
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtatt 77  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  25624770 ttctcaaaaaggtcttataattagggacggagggagtatt 25624731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 26322268 - 26322331
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    |||||||||||||||||        |||||||||  ||||||||||||||||||||||||||||    
T  26322268 gtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggaggtagtat 26322331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 41 - 76
Target Start/End: Original strand, 29830757 - 29830792
Alignment:
Q  41 tcaaaaatgtcttataattagggacggaggtagtat 76  Q
    ||||||| ||||||||||||||||||||||||||||    
T  29830757 tcaaaaaggtcttataattagggacggaggtagtat 29830792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 8912849 - 8912911
Alignment:
Q  13 gtcttataaaaagggacnnnnnnnnttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    |||||||||||||||||        |||||||||  |||||||||||||||||||||||||||    
T  8912849 gtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggaggtagta 8912911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 11865289 - 11865327
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  11865289 ttctcaaaagagtcttataattagggacggaggtagtat 11865327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 17665560 - 17665522
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    |||||||||| ||||||||||||||||||||| ||||||    
T  17665560 ttctcaaaaaggtcttataattagggacggagctagtat 17665522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 2060353 - 2060316
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    |||||||||  |||||||||||||||||||||||||||    
T  2060353 ttctcaaaagggtcttataattagggacggaggtagta 2060316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 7116299 - 7116336
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    |||||||||  |||||||||||||||||||||||||||    
T  7116299 ttctcaaaagggtcttataattagggacggaggtagta 7116336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 26334845 - 26334882
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    |||||||||  |||||||||||||||||||||||||||    
T  26334845 ttctcaaaagagtcttataattagggacggaggtagta 26334882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 28566188 - 28566151
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    |||||||||  |||||||||||||||||||||||||||    
T  28566188 ttctcaaaagggtcttataattagggacggaggtagta 28566151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 4408778 - 4408818
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtatta 78  Q
    |||||||||| |||||||||||| | |||||||||||||||    
T  4408778 ttctcaaaaaggtcttataattaagaacggaggtagtatta 4408818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 77
Target Start/End: Original strand, 12890219 - 12890247
Alignment:
Q  49 gtcttataattagggacggaggtagtatt 77  Q
    |||||||||||||||||||||||||||||    
T  12890219 gtcttataattagggacggaggtagtatt 12890247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 44017774 - 44017738
Alignment:
Q  40 ctcaaaaatgtcttataattagggacggaggtagtat 76  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  44017774 ctcaaaaatgtcttataattagggacagagatagtat 44017738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 77
Target Start/End: Original strand, 65637 - 65676
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagtatt 77  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  65637 ttctcaaaaaggtcttataattagggacggagggagtatt 65676  T

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Target: scaffold0674 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 5188 - 5151
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    |||||||||  |||||||||||||||||||||||||||    
T  5188 ttctcaaaagggtcttataattagggacggaggtagta 5151  T

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Target: scaffold0549 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 10182 - 10219
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    |||||||||  |||||||||||||||||||||||||||    
T  10182 ttctcaaaagggtcttataattagggacggaggtagta 10219  T

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Target: scaffold0240 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 18534 - 18497
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    |||||||||  |||||||||||||||||||||||||||    
T  18534 ttctcaaaagggtcttataattagggacggaggtagta 18497  T

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Target: scaffold0237 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 78
Target Start/End: Original strand, 6620 - 6649
Alignment:
Q  49 gtcttataattagggacggaggtagtatta 78  Q
    ||||||||||||||||||||||||||||||    
T  6620 gtcttataattagggacggaggtagtatta 6649  T

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Target: scaffold0161 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 3475 - 3438
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    |||||||||  |||||||||||||||||||||||||||    
T  3475 ttctcaaaagggtcttataattagggacggaggtagta 3438  T

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Target: scaffold0107 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 48691 - 48654
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    |||||||||  |||||||||||||||||||||||||||    
T  48691 ttctcaaaagggtcttataattagggacggaggtagta 48654  T

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Target: scaffold0039 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 104061 - 104098
Alignment:
Q  38 ttctcaaaaatgtcttataattagggacggaggtagta 75  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  104061 ttctcaaaaagatcttataattagggacggaggtagta 104098  T

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Target: scaffold0163 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 77
Target Start/End: Original strand, 1457 - 1485
Alignment:
Q  49 gtcttataattagggacggaggtagtatt 77  Q
    |||||||||||||||||||||||||||||    
T  1457 gtcttataattagggacggaggtagtatt 1485  T

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Target: scaffold0023 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 177
Target Start/End: Complemental strand, 111715 - 111613
Alignment:
Q  73 gtattagagatataggtttagtggtatattagttctaataaatagtaccataaatagcttgtaaccactctattagtggaaactttcactcattttgtaa 172  Q
    ||||||||||||||| || ||| | |||||||| ||| || | ||||  ||||||| ||||||||||| | ||||| || ||||||  ||||||||||||    
T  111715 gtattagagatatagatt-agtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagggaactttt-ctcattttgtaa 111618  T
Q  173 tattc 177  Q
    |||||    
T  111617 tattc 111613  T

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Target: scaffold0020 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 77
Target Start/End: Complemental strand, 164240 - 164212
Alignment:
Q  49 gtcttataattagggacggaggtagtatt 77  Q
    |||||||||||||||||||||||||||||    
T  164240 gtcttataattagggacggaggtagtatt 164212  T

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