View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_421 (Length: 201)
Name: NF8518A_low_421
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_421 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 6 - 179
Target Start/End: Original strand, 21378359 - 21378532
Alignment:
| Q |
6 |
actatattcactccaggctatcttcagttaacctacctgctatttatggtaaccttattggaacagggaactattttgttgttgtagggcttggtactcc |
105 |
Q |
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| T |
21378359 |
actatattcactccaagctatcttcagataacctacctgctatttatggtaaccttattggaacagggaactattttgttgttgtagggcttggtactcc |
21378458 |
T |
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| Q |
106 |
taaaaggatcttgtctcttgtttttgatactggtagtgatctcacttggactcagtgtcaaccttgtgatcgtc |
179 |
Q |
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| T |
21378459 |
taaaaggaacttgtctcttgtttttgatactggtagtgatctcacttggactcagtgtcaaccttgtgctcgtc |
21378532 |
T |
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Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 29 - 173
Target Start/End: Original strand, 21404851 - 21404995
Alignment:
| Q |
29 |
tcagttaacctacctgctatttatggtaaccttattggaacagggaactattttgttgttgtagggcttggtactcct-aaaaggatcttgtctcttgtt |
127 |
Q |
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| T |
21404851 |
tcagctaacctaccagctaaatctggtagccttattggatcagggaattattttgttgttttagggcttggaactcctaaaaaggat-ttgtcacttatt |
21404949 |
T |
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| Q |
128 |
tttgatactggtagtgatctcacttggactcagtgtcaaccttgtg |
173 |
Q |
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| T |
21404950 |
tttgacactggtagtgatctcacttggactcaatgtcaaccttgtg |
21404995 |
T |
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