View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_43 (Length: 414)
Name: NF8518A_low_43
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 39370570 - 39370763
Alignment:
| Q |
1 |
tcataacaaatcacatctacagaatgaactctcttcaacttttctgtcttctcctatagacttcgcaaactctccacagtaatctcactaaacattactc |
100 |
Q |
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| T |
39370570 |
tcataacaaatcacatctacagaatgaactctcttcaacttttctgtcttctcctatagacttcgcaaactctccacagtaatggcactaaacattactc |
39370669 |
T |
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| Q |
101 |
atatattttggttgaaatcttctaccatgttgattaccatatttctttccttgcccacctttagttactagcgcattataaaccatatccatca |
194 |
Q |
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| T |
39370670 |
atatattttggttgaaatcttctaccatgttgatcaccataattctttccttgcccacctttagttactagtgcattataaaccatatccatca |
39370763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 314 - 408
Target Start/End: Original strand, 39370780 - 39370874
Alignment:
| Q |
314 |
gtgaatcaaatgacaaaccaaaccctgtaaatcacgtgaagtttgcacacatgaagtttgccaaaagatccgcgcaaatatttgcttctctataa |
408 |
Q |
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| T |
39370780 |
gtgaatcaaatgacaaaccaaaccctgtaaatcacgtgaagtttgcacacatgaagtttgccaaaagatccgcgcaaatatttgcttctctataa |
39370874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 34263626 - 34263698
Alignment:
| Q |
99 |
tcatatattttggttgaaatcttctaccatgttgattaccatatttctttccttgcccacctttagttactag |
171 |
Q |
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| T |
34263626 |
tcatatctcttggttgaaatcttctatcatgttgatcaccataattctttcattgtccgcatttagttactag |
34263698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 2354087 - 2354025
Alignment:
| Q |
109 |
tggttgaaatcttctaccatgttgattaccatatttctttccttgcccacctttagttactag |
171 |
Q |
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| T |
2354087 |
tggttgaaatcttatgccatattgatcaccatatttatttccttaccaaccgttagttactag |
2354025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 171
Target Start/End: Complemental strand, 24528764 - 24528699
Alignment:
| Q |
106 |
ttttggttgaaatcttctaccatgttgattaccatatttctttccttgcccacctttagttactag |
171 |
Q |
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| T |
24528764 |
tttttgttgaaatctcctaccatattgatcaccacaattctttcctttccaaccattagttactag |
24528699 |
T |
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