View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8518A_low_44 (Length: 412)
Name: NF8518A_low_44
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_44 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Complemental strand, 3990707 - 3990304
Alignment:
| Q |
1 |
agtgaaggaaattttagcgccaagttgtcgagtgtttgtgtctgttatttcttttcaatttaacttccactgaaataatgggagattgaaaagctaacgg |
100 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3990707 |
agtgaaggaaattttagctccaagttttcgagtgtttgtgtctgttatttcttttcaatttaacttccactgaaataatgggaaattgaaaagctaacgg |
3990608 |
T |
|
| Q |
101 |
agacctttgatttattagttacaagaattccatgccataaagtttgttaaaaatgcctatcataatnnnnnnnnnnnnnngaagcaacaattacgctttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3990607 |
agacctttgatttattagttacaagaattccatgccataaagtttgttaaaaatgcctatcataataaaaaaaataaaaagaagcaacaattacgctttt |
3990508 |
T |
|
| Q |
201 |
agtgacaaaagatgctcgcagcaactccaagctattgcaaacccatcagatgaagaagtagccctaccaagttcatccataacaatcaaactcctgcatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3990507 |
agtgacaaaagatgctcgcagcaactccaagctattgcaaacccatcagatgaagaagtagccctaccaagttcatccataacaatcaaactcctgcatc |
3990408 |
T |
|
| Q |
301 |
aaataaaggtttaaagctgcatgcataccaagagtgaagaaaatcaaaaggtggtgttacctctctgaaacattctgcatgataaaagctgtctctttca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3990407 |
aaataaaggtttaaagctgcatgcataccaagagtgaagaaaatcaaaaggtggtgttacctctctgaaacattctgcatgataaaagctgtctctttca |
3990308 |
T |
|
| Q |
401 |
tctc |
404 |
Q |
| |
|
|||| |
|
|
| T |
3990307 |
tctc |
3990304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University