View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_45 (Length: 411)
Name: NF8518A_low_45
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 12 - 405
Target Start/End: Complemental strand, 35549757 - 35549364
Alignment:
| Q |
12 |
atgaatataccagtagggaatggtgcaaatgacttagaacagcttgctttaataagctccaaattctcagaaataacaacagaaccatcagctgcaatac |
111 |
Q |
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| T |
35549757 |
atgaatataccagtagggaatggtgcaaatgacttagaacagcttgctttaataagctccaaattctcagaaataacaacagaaccatcagctgcaatac |
35549658 |
T |
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| Q |
112 |
cccagaaaaggccaatttgtccattacaatcctgctcaaacataaccaacatgtgggccattaatcccagcattacacttacacataagagcttaattat |
211 |
Q |
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| T |
35549657 |
cccagaaaaggtcaatttgtccattacgatcctgctcaaacatagccaacatgtgggccattaatcctagcattacacttacacataagagcttaattat |
35549558 |
T |
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| Q |
212 |
taataaaactaccatgtagtaaattattaagaatagagatataaattataatgaaagtgattaaaaaagtggcttactgatgcaacaaaaacagttccat |
311 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35549557 |
taataaaagtaccatgtagtaaattattaagaatagagatataaattataatgaaagtgattaaaaaagtggcttactgatgcaacaaaaacagttccat |
35549458 |
T |
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| Q |
312 |
ctttgtcatcatagatgataaatccaaaactaccatcaagttctttgaggacttgatctgcagggaatggacccctgtcacgaagtgtcctata |
405 |
Q |
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| T |
35549457 |
ctttgtcatcatagatgataaatccaaaactaccatcaagttctttgaggacttgatctgcagggaatggacccctgtcacgaagtgtcctata |
35549364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 271 - 401
Target Start/End: Complemental strand, 3489278 - 3489148
Alignment:
| Q |
271 |
attaaaaaagtggcttactgatgcaacaaaaacagttccatctttgtcatcatagatgataaatccaaaactaccatcaagttctttgaggacttgatct |
370 |
Q |
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| T |
3489278 |
attaagaaagtgactcacagatgcagcaaaaacagttccgtccttatggtcatagatcacaaatgcaaaactgccttcaagtcctttgaggacttgatca |
3489179 |
T |
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| Q |
371 |
gcagggaatggacccctgtcacgaagtgtcc |
401 |
Q |
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| T |
3489178 |
gcagggtatggacccctgtcacgaagtgtcc |
3489148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 3489469 - 3489372
Alignment:
| Q |
18 |
ataccagtagggaatggtgcaaatgacttagaacagcttgctttaataagctccaaattctcagaaataacaacagaaccatcagctgcaatacccca |
115 |
Q |
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| T |
3489469 |
ataccagttggaaatggtgcaaatgatttagcacagctagcttttacaagctccaaattttcagaaataaccacagaaccatcagcagcaatacccca |
3489372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 14981799 - 14981857
Alignment:
| Q |
55 |
ttgctttaataagctccaaattctcagaaataacaacagaaccatcagctgcaataccc |
113 |
Q |
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| T |
14981799 |
ttgcttttataaggtccacattttcagaaataacaactgatccatcagcttcaataccc |
14981857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 405
Target Start/End: Complemental strand, 5946249 - 5946180
Alignment:
| Q |
336 |
caaaactaccatcaagttctttgaggacttgatctgcagggaatggacccctgtcacgaagtgtcctata |
405 |
Q |
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||||||||||||||||||| || |||||||||| || ||||||| |||||||||||||||||||| |
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| T |
5946249 |
caaaactaccatcaagttccttagcaacttgatctggtggatatggaccactgtcacgaagtgtcctata |
5946180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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