View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8518A_low_48 (Length: 408)
Name: NF8518A_low_48
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_48 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 127 - 408
Target Start/End: Complemental strand, 39219882 - 39219601
Alignment:
| Q |
127 |
aaactaagcttatgttccaatgtagactgaaagaaattacatcggggaaaatatctcgcattacaaaacttagctataagtcaacatgaatttgtcataa |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39219882 |
aaactaagcttatgttccaatgtagactgaaagaaattacatcggggaaaatatctcgcattataaaacttagctataactcaacatgaatttgtcataa |
39219783 |
T |
|
| Q |
227 |
ttcttcaacattgtttgcttaacattgtttttgtacatagacaacttgtcacgagaaagccaattaattcctctattttaagcttttgaatgtccccatc |
326 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
39219782 |
ttctttaacattgtttgcttaacattgtttttgtacatagacaacttgtcgcgagaaagccaattaattcctctattttaagcttttgaatgtccccacc |
39219683 |
T |
|
| Q |
327 |
aaaaggaattcatcaccctttcaatctcttcacaaagagatacaaacaaagtgaataaactcgtcaaataaataggaataga |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
39219682 |
aaaaggaattcatcaccctttcaatctcttcacaaagagatacaaacaaagtgaataaactcgtgaaataagtaggaataga |
39219601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 39220015 - 39219915
Alignment:
| Q |
27 |
agccatatcagaaaaaagaattacatcactcgtaattcaactattatttcaaaccagaatatccacatcatcacttatcatccacccacttcatgctagg |
126 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||| |
|
|
| T |
39220015 |
agccatatgagaaaaaagaattacatcactcgtaatttaactattatttcaaaccagaatatccacatcatcacctatcttccacccactttatgctagg |
39219916 |
T |
|
| Q |
127 |
a |
127 |
Q |
| |
|
| |
|
|
| T |
39219915 |
a |
39219915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 383
Target Start/End: Original strand, 45707052 - 45707152
Alignment:
| Q |
282 |
aaagccaattaattcctctattttaagcttttgaatgtccccatcaaaaggaattcatcaccctttcaatctcttcacaaagagatacaaacaaagtgaa |
381 |
Q |
| |
|
|||| |||||||||||||||||| | || |||||||||||| | |||||||||| || ||||||||| | ||| ||||||||||| ||||| |||| |
|
|
| T |
45707052 |
aaagacaattaattcctctatttaga-ctcatgaatgtccccactagaaggaattcaccatcctttcaatttattcctaaagagatacacacaaaatgaa |
45707150 |
T |
|
| Q |
382 |
ta |
383 |
Q |
| |
|
|| |
|
|
| T |
45707151 |
ta |
45707152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 388
Target Start/End: Complemental strand, 15026161 - 15026053
Alignment:
| Q |
280 |
agaaagccaattaattcctctattttaagcttttgaatgtccccatcaaaaggaattcatcaccctttcaatctcttcacaaagagatacaaacaaagtg |
379 |
Q |
| |
|
||||||||| ||||| |||||| ||| | || ||||| ||||| |||||||||||||||| |||||||| | ||||||||||| |||| | |||| |
|
|
| T |
15026161 |
agaaagccagttaatacctctactttgacctcccgaatgaccccaccaaaaggaattcatcattctttcaattccatcacaaagagagacaaggagagtg |
15026062 |
T |
|
| Q |
380 |
aataaactc |
388 |
Q |
| |
|
|| |||||| |
|
|
| T |
15026061 |
aacaaactc |
15026053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 366
Target Start/End: Original strand, 19111818 - 19111930
Alignment:
| Q |
254 |
tttttgtacatagacaacttgtcacgagaaagccaattaattcctctattttaagcttttgaatgtccccatcaaaaggaattcatcaccctttcaatct |
353 |
Q |
| |
|
||||||| |||||| ||| |||| | |||| ||||| || ||| |||||| |||| |||||| ||||| || || |||||||||| | ||||||||| |
|
|
| T |
19111818 |
tttttgtgcatagataacctgtcccatgaaatccaatggatacctttattttgagctcctgaatgaccccagcagaatgaattcatcatcttttcaatct |
19111917 |
T |
|
| Q |
354 |
cttcacaaagaga |
366 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
19111918 |
catcacaaagaga |
19111930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University