View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_50 (Length: 407)
Name: NF8518A_low_50
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 9e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 124 - 315
Target Start/End: Original strand, 26967798 - 26967990
Alignment:
| Q |
124 |
gagtttaattttcatatatggtttatatcaattttatttccactttaaacaaatcacaaccacatatatgtgactt-aaaaatacttatgattaaaatta |
222 |
Q |
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| T |
26967798 |
gagtttaattttcatatatggtttatatcaattttatttccactttaaacaaatcacaaccacatatatgtgacttaaaaaatattcatgattaaaatta |
26967897 |
T |
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| Q |
223 |
aatgttcataatcatctaacaattatgattaatttttaagtgtnnnnnnntaattacaccaaccatatacaagaattaaatcgatatatatgg |
315 |
Q |
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| T |
26967898 |
aatgttcataatcatctaacaattatgattaatttttaagtgtaaaaaaataattacaccaaccatatacaagaattaaatcgatatatatgg |
26967990 |
T |
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Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 26967679 - 26967734
Alignment:
| Q |
5 |
caattgaagccttgattattagcaaatgatccagtagttggagatggaagaatctg |
60 |
Q |
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| T |
26967679 |
caattgaagccttgattattagcaaatgatccagtagttggagatggaagaatctg |
26967734 |
T |
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