View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8518A_low_51 (Length: 406)
Name: NF8518A_low_51
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_51 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 3 - 395
Target Start/End: Complemental strand, 36314808 - 36314413
Alignment:
| Q |
3 |
acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta |
102 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36314808 |
acatcaaaaaacgcgggaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccagtgaatgttcaacatatgtatcagta |
36314709 |
T |
|
| Q |
103 |
cattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagtttatacgatgggagctatcctcgaagggcaagttaacaagt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
36314708 |
cattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagtttatatgatgggagctatcctcgaagggcaagttaacaagt |
36314609 |
T |
|
| Q |
203 |
ggtgatgaagacaatgctagtggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaactt |
302 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36314608 |
ggtgttgaagacaatgctagtggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaactt |
36314509 |
T |
|
| Q |
303 |
gtagggaacctggtgaggtttttcagaaaaaggtgggaacacc---aagcaaaatggacaatgcatcatcatatgaatggaatgtaatttatggtt |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36314508 |
gtagggaacctggtgaggtttttcagaaaaaggtgggaacaccaaaaagcaaaatggacaatgcatcatcatatgaatggaatgtaatttatggtt |
36314413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 6e-84; HSPs: 28)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 3 - 347
Target Start/End: Original strand, 19345129 - 19345458
Alignment:
| Q |
3 |
acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta |
102 |
Q |
| |
|
||||||| ||| |||||| || |||||||||||| ||||||||||| ||||||||||| |||||||||||||| | ||| ||||||| ||| |||||||| |
|
|
| T |
19345129 |
acatcaagaaaagcggcatagcgtattggaaaagcggaaaacttaatagcaatggaatattcgagaacattcccacgaaagttcaacgtatatatcagta |
19345228 |
T |
|
| Q |
103 |
cattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagtttatacgatgggagctatcctcgaagggcaagttaacaagt |
202 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| | ||| ||||||| || | |||| | |
|
|
| T |
19345229 |
cattattgtctctaacaagaatgaagattctttcgctttcgaagttaaagatgggaagtttgcacgatggcaactaacctcgaacgggaggttagta--- |
19345325 |
T |
|
| Q |
203 |
ggtgatgaagacaatgctagtggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaactt |
302 |
Q |
| |
|
||| |||| |||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
19345326 |
ggtcatga------------tggagatattgggaatgcagatatgtgttatggatataatagcaatggagggtgccaaaaatgggaggaaataccaaatt |
19345413 |
T |
|
| Q |
303 |
gtagggaacctggtgaggtttttcagaaaaaggtgggaacaccaa |
347 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
19345414 |
gtagggaaaatggtgaggtttttcagaaaatggtgggaacaccaa |
19345458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 15 - 347
Target Start/End: Complemental strand, 19504202 - 19503885
Alignment:
| Q |
15 |
gcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttc |
114 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| | || ||||||| ||| ||||||||||||||||| || |
|
|
| T |
19504202 |
gcggcaaagtgcattggaaaagcggaaaacttaaaagcaatggaatattcgagaacattcccacaaaagttcaacgtatatatcagtacattattgtctc |
19504103 |
T |
|
| Q |
115 |
taacaagaatgaagattctttcgcttttgaagttaaagatgggaagtttatacgatgggagctatcctcgaagggcaagttaacaagtggtgatgaagac |
214 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| | ||| |||||||||| | |||| | ||| |||| |
|
|
| T |
19504102 |
taacaagaatgaagattctttcgctttcgaagttaaagatgggaagtttgcacgatggcaactaacctcgaaggggaggttagta---ggtcatga---- |
19504010 |
T |
|
| Q |
215 |
aatgctagtggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctg |
314 |
Q |
| |
|
|||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| || |
|
|
| T |
19504009 |
--------tggagagattgggaatgcagatatgtgttatggatataatagcaatggagggtgccaaaaatgggaggaaataccaaattgtagggaaaatg |
19503918 |
T |
|
| Q |
315 |
gtgaggtttttcagaaaaaggtgggaacaccaa |
347 |
Q |
| |
|
|||||||||||||||||| | ||||||||||| |
|
|
| T |
19503917 |
gtgaggtttttcagaaaattgcgggaacaccaa |
19503885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 3 - 321
Target Start/End: Original strand, 19390543 - 19390864
Alignment:
| Q |
3 |
acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta |
102 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||| |||||||||||| ||| ||||| || |
|
|
| T |
19390543 |
acatcaagaaacgcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggtttattcgagaacattccggtgaatgttcaacgtatatatcaata |
19390642 |
T |
|
| Q |
103 |
cattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagtttatacgatgggagctatcctcgaagggcaagttaacaagt |
202 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||| | |||||||||| | ||||| |||| |
|
|
| T |
19390643 |
cattattgtctctaacaaggatgaagattcttttgctttcgaagttaaagatgggaagtttatacgatggttcattacctcgaaggggaggttaataagt |
19390742 |
T |
|
| Q |
203 |
ggtgatga---agacaatgctagtggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaa |
299 |
Q |
| |
|
| |||||| ||| | | ||||| ||| |||| |||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
19390743 |
gctgatgagggagagatttatagtgcagacattgctaatgcagataagtgttatggatataatagtgatgccgggtgccaaaaatgggaggatataccaa |
19390842 |
T |
|
| Q |
300 |
cttgtagggaacctggtgaggt |
321 |
Q |
| |
|
|||| ||||| ||| ||||||| |
|
|
| T |
19390843 |
cttgcagggaccctcgtgaggt |
19390864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 3 - 350
Target Start/End: Original strand, 19410740 - 19411072
Alignment:
| Q |
3 |
acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta |
102 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| ||||| ||||||||| || ||||||||| |
|
|
| T |
19410740 |
acatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggccaatgttcaaagtaggtatcagta |
19410839 |
T |
|
| Q |
103 |
cattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagtttatacgatgggagctatcctcgaagggcaagttaacaagt |
202 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||| | || ||||||||||||||||||||| || |||||| |||||||||||||| |||||| | |
|
|
| T |
19410840 |
cattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagatgggaagtttgcacaatgggaactatcctcgaaggggaagttagta--- |
19410936 |
T |
|
| Q |
203 |
ggtgatgaagacaatgctagtggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaactt |
302 |
Q |
| |
|
|||||||| |||| | |||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19410937 |
ggtgatga------------tggatatattgctaatgcagatatgtgttacggatataatagtgatggagggtgccaaaaatgggaggatataccaactt |
19411024 |
T |
|
| Q |
303 |
gtagggaacctggtgaggtttttcagaaaaaggtgggaacaccaagca |
350 |
Q |
| |
|
| ||||||||||||||| | ||||||||||||| ||||| |||||||| |
|
|
| T |
19411025 |
gcagggaacctggtgagatgtttcagaaaaaggcgggaagaccaagca |
19411072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 3 - 350
Target Start/End: Original strand, 19457759 - 19458091
Alignment:
| Q |
3 |
acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta |
102 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| ||||| ||||||||| || ||||||||| |
|
|
| T |
19457759 |
acatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggccaatgttcaaagtaggtatcagta |
19457858 |
T |
|
| Q |
103 |
cattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagtttatacgatgggagctatcctcgaagggcaagttaacaagt |
202 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||| | || ||||||||||||||||||||| || |||||| |||||||||||||| |||||| | |
|
|
| T |
19457859 |
cattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagatgggaagtttgcacaatgggaactatcctcgaaggggaagttagta--- |
19457955 |
T |
|
| Q |
203 |
ggtgatgaagacaatgctagtggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaactt |
302 |
Q |
| |
|
|||||||| |||| | |||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19457956 |
ggtgatga------------tggatatattgctaatgcagatatgtgttacggatataatagtgatggagggtgccaaaaatgggaggatataccaactt |
19458043 |
T |
|
| Q |
303 |
gtagggaacctggtgaggtttttcagaaaaaggtgggaacaccaagca |
350 |
Q |
| |
|
| ||||||||||||||| | ||||||||||||| ||||| |||||||| |
|
|
| T |
19458044 |
gcagggaacctggtgagatgtttcagaaaaaggcgggaagaccaagca |
19458091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 3 - 350
Target Start/End: Complemental strand, 19523319 - 19522987
Alignment:
| Q |
3 |
acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta |
102 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| ||||| ||||||||| || ||||||||| |
|
|
| T |
19523319 |
acatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggccaatgttcaaagtaggtatcagta |
19523220 |
T |
|
| Q |
103 |
cattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagtttatacgatgggagctatcctcgaagggcaagttaacaagt |
202 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||| | || ||||||||||||||||||||| || |||||| |||||||||||||| |||||| | |
|
|
| T |
19523219 |
cattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagatgggaagtttgcacaatgggaactatcctcgaaggggaagttagta--- |
19523123 |
T |
|
| Q |
203 |
ggtgatgaagacaatgctagtggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaactt |
302 |
Q |
| |
|
|||||||| |||| | |||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19523122 |
ggtgatga------------tggatatattgctaatgcagatatgtgttacggatataatagtgatggagggtgccaaaaatgggaggatataccaactt |
19523035 |
T |
|
| Q |
303 |
gtagggaacctggtgaggtttttcagaaaaaggtgggaacaccaagca |
350 |
Q |
| |
|
| ||||||||||||||| | ||||||||||||| ||||| |||||||| |
|
|
| T |
19523034 |
gcagggaacctggtgagatgtttcagaaaaaggcgggaagaccaagca |
19522987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 3 - 347
Target Start/End: Original strand, 19592090 - 19592416
Alignment:
| Q |
3 |
acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta |
102 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| ||||| ||||||||| ||| ||||||||| |
|
|
| T |
19592090 |
acatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggccaatgttcaaaataggtatcagta |
19592189 |
T |
|
| Q |
103 |
cattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagtttatacgatgggagctatcctcgaagggcaagttaacaagt |
202 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||| | || ||||||||||||||||||||| || |||||| ||| |||||| || | |||| | |
|
|
| T |
19592190 |
cattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagatgggaagtttgcacaatgggaactaatctcgaaagggaggttagta--- |
19592286 |
T |
|
| Q |
203 |
ggtgatgaagacaatgctagtggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaactt |
302 |
Q |
| |
|
|||||||| |||| | |||| ||||||||||| ||||| |||| |||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
19592287 |
ggtgatga------------tggatatattgctaatgcagatatgtgttacggat---atagtgatggaggatgccaaaaatgggaggatataccaactt |
19592371 |
T |
|
| Q |
303 |
gtagggaacctggtgaggtttttcagaaaaaggtgggaacaccaa |
347 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19592372 |
gcagggaacctggtgaggtttttcagaaaaaggcgggaacaccaa |
19592416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 3 - 350
Target Start/End: Complemental strand, 19469684 - 19469355
Alignment:
| Q |
3 |
acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta |
102 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| ||||| ||||||||| ||| ||||||||| |
|
|
| T |
19469684 |
acatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggccaatgttcaaaataggtatcagta |
19469585 |
T |
|
| Q |
103 |
cattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagtttatacgatgggagctatcctcgaagggcaagttaacaagt |
202 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||| | || ||||||||||||||||||||| || |||||| ||| |||||| || | |||| | |
|
|
| T |
19469584 |
cattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagatgggaagtttgcacaatgggaactaatctcgaaagggaggttagta--- |
19469488 |
T |
|
| Q |
203 |
ggtgatgaagacaatgctagtggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaactt |
302 |
Q |
| |
|
|||||||| |||| | |||| ||||||||||| ||||| |||| |||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
19469487 |
ggtgatga------------tggatatattgctaatgcagatatgtgttacggat---atagtgatggaggatgccaaaaatgggaggatataccaactt |
19469403 |
T |
|
| Q |
303 |
gtagggaacctggtgaggtttttcagaaaaaggtgggaacaccaagca |
350 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||| ||||| |||||||| |
|
|
| T |
19469402 |
gcagggaacctggtgaggtgtttcagaaaaaggcgggaagaccaagca |
19469355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 3 - 350
Target Start/End: Complemental strand, 19540608 - 19540279
Alignment:
| Q |
3 |
acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta |
102 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| ||||| ||||||||| ||| ||||||||| |
|
|
| T |
19540608 |
acatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggccaatgttcaaaataggtatcagta |
19540509 |
T |
|
| Q |
103 |
cattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagtttatacgatgggagctatcctcgaagggcaagttaacaagt |
202 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||| | || ||||||||||||||||||||| || |||||| ||| |||||| || | |||| | |
|
|
| T |
19540508 |
cattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagatgggaagtttgcacaatgggaactaatctcgaaagggaggttagta--- |
19540412 |
T |
|
| Q |
203 |
ggtgatgaagacaatgctagtggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaactt |
302 |
Q |
| |
|
|||||||| |||| | |||| ||||||||||| ||||| |||| |||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
19540411 |
ggtgatga------------tggatatattgctaatgcagatatgtgttacggat---atagtgatggaggatgccaaaaatgggaggatataccaactt |
19540327 |
T |
|
| Q |
303 |
gtagggaacctggtgaggtttttcagaaaaaggtgggaacaccaagca |
350 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||| ||||| |||||||| |
|
|
| T |
19540326 |
gcagggaacctggtgaggtgtttcagaaaaaggcgggaagaccaagca |
19540279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 19337427 - 19337582
Alignment:
| Q |
17 |
ggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttcta |
116 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| ||| || |||||||||||||| |||| |
|
|
| T |
19337427 |
ggcaaagtgcattggaaaagtggaaaactcaaaagcaatggaatgttcgagaacattcctgcgaaagttcaacgtatataccagtacattattgtgtcta |
19337526 |
T |
|
| Q |
117 |
acaagaatgaagattctttcgcttttgaagttaaagatgggaagtttatacgatgg |
172 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19337527 |
acaaggatgaagattcttttgcttttgaagttaaagatgggaaatttatacgatgg |
19337582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 19355445 - 19355602
Alignment:
| Q |
15 |
gcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttc |
114 |
Q |
| |
|
||||||||||| |||||||||| |||||||||| ||| |||||||| ||||||||||||||| ||| |||||| ||| |||| |||||||||||| || |
|
|
| T |
19355445 |
gcggcaaagtgcattggaaaagcggaaaacttagaagtaatggaatattcgagaacattccagcgaaagttcaaagtatatatcggtacattattgtgtc |
19355544 |
T |
|
| Q |
115 |
taacaagaatgaagattctttcgcttttgaagttaaagatgggaagtttatacgatgg |
172 |
Q |
| |
|
||||||| ||||||||||||| ||||| |||||||| |||||||| |||||||||||| |
|
|
| T |
19355545 |
taacaaggatgaagattcttttgctttcgaagttaatgatgggaattttatacgatgg |
19355602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 4 - 141
Target Start/End: Complemental strand, 19468747 - 19468610
Alignment:
| Q |
4 |
catcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtac |
103 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
19468747 |
catcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggtgaatgttcaacatatgtatcagtac |
19468648 |
T |
|
| Q |
104 |
attattgtttctaacaagaatgaagattctttcgcttt |
141 |
Q |
| |
|
|||||||| |||||||| | |||||||||||| |||| |
|
|
| T |
19468647 |
attattgtctctaacaaagacgaagattctttcacttt |
19468610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 4 - 141
Target Start/End: Complemental strand, 19555668 - 19555531
Alignment:
| Q |
4 |
catcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtac |
103 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
19555668 |
catcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggtgaatgttcaacatatgtatcagtac |
19555569 |
T |
|
| Q |
104 |
attattgtttctaacaagaatgaagattctttcgcttt |
141 |
Q |
| |
|
|||||||| |||||||| | |||||||||||| |||| |
|
|
| T |
19555568 |
attattgtctctaacaaagacgaagattctttcacttt |
19555531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 235 - 347
Target Start/End: Original strand, 19337681 - 19337793
Alignment:
| Q |
235 |
aaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaag |
334 |
Q |
| |
|
||||||||| || |||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||| | |
|
|
| T |
19337681 |
aaatgcagacatgtgttatggatataatagcgatggagggtgccaaaaatgggaggaaataccaaattgtagggaacctggtgaggtttttcggaaaatg |
19337780 |
T |
|
| Q |
335 |
gtgggaacaccaa |
347 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
19337781 |
gtgggaagaccaa |
19337793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 248 - 347
Target Start/End: Original strand, 19355714 - 19355813
Alignment:
| Q |
248 |
tgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaaggtgggaacaccaa |
347 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
19355714 |
tgttatggatataatagcgatggagggtgccaaaaatgggaggaaataccaaattgtagggaacctggtgaggtttttcggaaaaaggtgggaagaccaa |
19355813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 224 - 347
Target Start/End: Complemental strand, 19468533 - 19468410
Alignment:
| Q |
224 |
ggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggttt |
323 |
Q |
| |
|
||||| |||| |||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
19468533 |
ggagatattgtaaatgcagatatgtgttatggatataatagtgatggaggatgccaaaaatgggaggatataccaacttgtagggcacctggtgaggggt |
19468434 |
T |
|
| Q |
324 |
ttcagaaaaaggtgggaacaccaa |
347 |
Q |
| |
|
|||||||||||| ||||| ||||| |
|
|
| T |
19468433 |
ttcagaaaaaggcgggaagaccaa |
19468410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 224 - 347
Target Start/End: Complemental strand, 19555454 - 19555331
Alignment:
| Q |
224 |
ggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggttt |
323 |
Q |
| |
|
||||| |||| |||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
19555454 |
ggagatattgtaaatgcagatatgtgttatggatataatagtgatggaggatgccaaaaatgggaggatataccaacttgtagggcacctggtgaggggt |
19555355 |
T |
|
| Q |
324 |
ttcagaaaaaggtgggaacaccaa |
347 |
Q |
| |
|
|||||||||||| ||||| ||||| |
|
|
| T |
19555354 |
ttcagaaaaaggcgggaagaccaa |
19555331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 224 - 329
Target Start/End: Original strand, 19404923 - 19405028
Alignment:
| Q |
224 |
ggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggttt |
323 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
19404923 |
ggagatattggaaatgcagatatgtgttatggatataatagggacggagggtgccaaaagtgggaggatataccaacttgtagggaacctggtgaggtgt |
19405022 |
T |
|
| Q |
324 |
ttcaga |
329 |
Q |
| |
|
|||||| |
|
|
| T |
19405023 |
ttcaga |
19405028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 230 - 327
Target Start/End: Original strand, 19376801 - 19376898
Alignment:
| Q |
230 |
attggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttca |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||| |
|
|
| T |
19376801 |
attggaaatgcagatatatgttatggatataatagtgatcgagggtgccaaaaatgggaggatataccagcttgcagggaacctggtgaggtgtttca |
19376898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #20
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 3 - 159
Target Start/End: Original strand, 19376577 - 19376733
Alignment:
| Q |
3 |
acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta |
102 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| ||||| ||||||||| ||||||||| ||| |
|
|
| T |
19376577 |
acatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggccaatgttcaaaatatgtatcggta |
19376676 |
T |
|
| Q |
103 |
cattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaa |
159 |
Q |
| |
|
||| ||||| ||||||||| |||||||||| || ||||||| |||||||| |||| |
|
|
| T |
19376677 |
catcattgtctctaacaaggatgaagattcctttagttttgaaattaaagatcggaa |
19376733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #21
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 3 - 154
Target Start/End: Complemental strand, 19172972 - 19172821
Alignment:
| Q |
3 |
acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta |
102 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||| | ||| ||||||||| | |||| ||||||||| ||||||| || |
|
|
| T |
19172972 |
acatcaagcaacgcggcaaagtgtattggaaaagcggaaaacttaacagcaatggattattcaagaacattctagtgaaagttcaacatgtgtatcaata |
19172873 |
T |
|
| Q |
103 |
cattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagat |
154 |
Q |
| |
|
||||||||| ||||||||| ||||||| || ||| |||| ||| | |||||| |
|
|
| T |
19172872 |
cattattgtctctaacaaggatgaagactccttcactttcgaaatcaaagat |
19172821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #22
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 3 - 154
Target Start/End: Original strand, 19287674 - 19287825
Alignment:
| Q |
3 |
acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta |
102 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||| || | ||||||| | ||||||||||||||| |||| ||||||| | ||||||| || |
|
|
| T |
19287674 |
acatcaagcaacgcggcaaagtgtattggaaaagcggaaaacgtagacgcaatggtttattcgagaacattccagtgaaagttcaacgtgtgtatcaata |
19287773 |
T |
|
| Q |
103 |
cattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagat |
154 |
Q |
| |
|
||||||||| ||||||||| ||||||| || ||| |||| ||| | |||||| |
|
|
| T |
19287774 |
cattattgtctctaacaaggatgaagactccttcactttcgaaatcaaagat |
19287825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #23
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 3 - 141
Target Start/End: Original strand, 19404708 - 19404846
Alignment:
| Q |
3 |
acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta |
102 |
Q |
| |
|
||||||| ||| | |||||||||||||||||||| ||||||||||||||| ||||| | |||||||| ||||| ||||||||| ||||||||| || |
|
|
| T |
19404708 |
acatcaagaaaagaggcaaagtgtattggaaaagcggaaaacttaaaagcgatggattattcgagaatattccggccaatgttcaaactatgtatcaata |
19404807 |
T |
|
| Q |
103 |
cattattgtttctaacaagaatgaagattctttcgcttt |
141 |
Q |
| |
|
|| |||||| ||||||||| |||||||||||||| |||| |
|
|
| T |
19404808 |
cactattgtctctaacaaggatgaagattctttcacttt |
19404846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #24
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 19370934 - 19371046
Alignment:
| Q |
17 |
ggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttcta |
116 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||| | ||||||||||||||| |||||| |||||| |||||| ||||| ||||| |||| |
|
|
| T |
19370934 |
ggcaaagtgcattggaaaagtggaaaacttagaagcaatggattattcgagaacattccagagaatgtccaacatgtgtatcgatacatgattgtctcta |
19371033 |
T |
|
| Q |
117 |
acaagaatgaaga |
129 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
19371034 |
acaaagatgaaga |
19371046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #25
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 239 - 321
Target Start/End: Complemental strand, 19172742 - 19172660
Alignment:
| Q |
239 |
gcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggt |
321 |
Q |
| |
|
|||||||| |||||||| ||||||| | |||||||||||||||||||||||||||||||||| || |||||||| |||||||| |
|
|
| T |
19172742 |
gcagatatgtgttatggctataataccgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggt |
19172660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #26
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 236 - 334
Target Start/End: Original strand, 19287901 - 19287999
Alignment:
| Q |
236 |
aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaag |
334 |
Q |
| |
|
|||||||||| |||||||||||||||| ||| |||||||||||||||||||||||| |||||||| ||||||| ||||||||| ||||| |||||| |
|
|
| T |
19287901 |
aatgcagataagtgttatggatataataatgatgaagggtgccaaaaatgggaggatatgccaacttgcagggaacgtggtgaggtctttcaaaaaaag |
19287999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #27
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 19341154 - 19341266
Alignment:
| Q |
17 |
ggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttcta |
116 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||| | ||||||||||||| | |||||| |||||| |||||| ||||| ||||| |||| |
|
|
| T |
19341154 |
ggcaaagtgcattggaaaagtggaaaacttggaagcaatggattattcgagaacattctagagaatgtccaacatgtgtatcgatacatgattgtctcta |
19341253 |
T |
|
| Q |
117 |
acaagaatgaaga |
129 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
19341254 |
acaaagatgaaga |
19341266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 258 - 305
Target Start/End: Original strand, 19371145 - 19371192
Alignment:
| Q |
258 |
ataatagcaatggagggtgccaaaaatgggaggatataccaacttgta |
305 |
Q |
| |
|
||||||| ||||| || ||||||||||||||| ||||||||||||||| |
|
|
| T |
19371145 |
ataatagtaatggtggatgccaaaaatgggagtatataccaacttgta |
19371192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 224 - 320
Target Start/End: Original strand, 19543241 - 19543337
Alignment:
| Q |
224 |
ggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgagg |
320 |
Q |
| |
|
||||| |||||||||||||| | |||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19543241 |
ggagatattggaaatgcagacttgtgttatggatataatatcaacggagggtgccaaaaatgggaggatataccaagttgtagggaacctggtgagg |
19543337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 154
Target Start/End: Original strand, 19543028 - 19543177
Alignment:
| Q |
5 |
atcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtaca |
104 |
Q |
| |
|
||||| ||| |||||||||||||||||||||| |||||||||| ||| ||||| | |||| |||||| || ||||||||||| | ||||| | |||| |
|
|
| T |
19543028 |
atcaagaaaagcggcaaagtgtattggaaaagcggaaaacttagaagaaatgggttattcgtgaacataccggcgaatgttcaacgtgtgtatgaataca |
19543127 |
T |
|
| Q |
105 |
ttattgtttctaacaagaatgaagattctttcgcttttgaagttaaagat |
154 |
Q |
| |
|
||||||||||||| || |||||||||| || ||||| || |||||||| |
|
|
| T |
19543128 |
ttattgtttctaagaaagatgaagattcctttacttttaaaattaaagat |
19543177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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