View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_52 (Length: 405)
Name: NF8518A_low_52
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 4283825 - 4284210
Alignment:
| Q |
1 |
gatccctctcaagctcttgactcacataaacctgaaatctcggccataaatgtaacttccgtaaccctaaacacttcatcgtcctctccgccttcgcaaa |
100 |
Q |
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| T |
4283825 |
gatccctctcaagctcttgactcacataaacctgaaatctcggccataaatgtaacttccgtaaccctaaacacttcatcgtcctctccgccttcgcaaa |
4283924 |
T |
|
| Q |
101 |
accagaaaccatagcctgaggacgatcagacaatgctctaacatacgcatcgcgattaaacgaacggaaaattcttacaataaacgcttcagtggaagtt |
200 |
Q |
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| T |
4283925 |
accagaaaccatcgcctgaggacgatcagaaaatgctctaacatacgcatcgcgattaaacgaacggaaaattcttacaataaacgcttcggtggaagtt |
4284024 |
T |
|
| Q |
201 |
tcggaaattgaatgtgcattgaggattaatataccggagattgttgatgtagggagtttgtttgttaaaagatcgacgatgaggattcgaggagtgatga |
300 |
Q |
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| T |
4284025 |
tcggaaattgaatgtgcattgaggattaacataccggagattgttgatgtagggagtttgtttgttaaaagatcgacgatgaggattcgaggagtgatga |
4284124 |
T |
|
| Q |
301 |
aacaaacgtggccggaggaatagagagagtgacggtggttaacagggagatcggcagtgatttccgtcgggatttggtgaagttgg |
386 |
Q |
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| T |
4284125 |
aacaaacgtggccggaggaatagagagagtgacggtggttaacggggagatcggcagtgatttctgtcgggatttggtgaagttgg |
4284210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 256 - 333
Target Start/End: Original strand, 23428538 - 23428615
Alignment:
| Q |
256 |
gtttgtttgttaaaagatcgacgatgaggattcgaggagtgatgaaacaaacgtggccggaggaatagagagagtgac |
333 |
Q |
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| T |
23428538 |
gtttatttgttaacagatcgacgatgaagacttgaggaatgatgaaacaaacgtggtcggaggagtagaaagagtgac |
23428615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 286 - 340
Target Start/End: Complemental strand, 25978388 - 25978334
Alignment:
| Q |
286 |
ttcgaggagtgatgaaacaaacgtggccggaggaatagagagagtgacggtggtt |
340 |
Q |
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| T |
25978388 |
ttcgaggagtgatgaaacaaatgtggccggaggaatatagagagcgatggtggtt |
25978334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 342
Target Start/End: Original strand, 4039751 - 4039804
Alignment:
| Q |
289 |
gaggagtgatgaaacaaacgtggccggaggaatagagagagtgacggtggttaa |
342 |
Q |
| |
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| T |
4039751 |
gaggagtgatcaaacaaatgtggccggaggaataaagagagcgatggtggttaa |
4039804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 286 - 342
Target Start/End: Original strand, 16999818 - 16999874
Alignment:
| Q |
286 |
ttcgaggagtgatgaaacaaacgtggccggaggaatagagagagtgacggtggttaa |
342 |
Q |
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||||||||||||| ||||||| ||||||||||||||| |||||| || ||||||||| |
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| T |
16999818 |
ttcgaggagtgataaaacaaatgtggccggaggaatatagagagcgatggtggttaa |
16999874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 342
Target Start/End: Original strand, 4183535 - 4183591
Alignment:
| Q |
286 |
ttcgaggagtgatgaaacaaacgtggccggaggaatagagagagtgacggtggttaa |
342 |
Q |
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||||||||||||| |||||| ||||||||||||||| |||||| || ||||||||| |
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| T |
4183535 |
ttcgaggagtgataaaacaattgtggccggaggaatatagagagcgatggtggttaa |
4183591 |
T |
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