View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_53 (Length: 404)
Name: NF8518A_low_53
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_53 |
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Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 8 - 395
Target Start/End: Complemental strand, 2943136 - 2942749
Alignment:
| Q |
8 |
aagcaaagaataggaacagaacacaaatgacatttttaaccttgaannnnnnnggctacaacaataaaatttacataatgtgtatctgacaatcaacatt |
107 |
Q |
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| T |
2943136 |
aagcaaagaataggaacagaacacaaatgacatttttaaccttgaatttttttggctacaacaataaaatttacataatgtgtatctgacaatcaacatt |
2943037 |
T |
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| Q |
108 |
gcattgtccaagtaaaagtagaactgtataacaaaaatagatgccatgaagaacactatagaactttacaaagaatgtaagaactatgaaggaagggttg |
207 |
Q |
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| T |
2943036 |
gcattgtccaagtaaaagtagaactgtataacaaaaatagatgccatgaagaacactatagaactttacaaagaatgtaagaactatgaaggaaaggttg |
2942937 |
T |
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| Q |
208 |
agaatcagaataccgtcaaactatatgatgcttccacctcaccagtattcttagtggtgattgtagcaactccaaattgagtaagggcttcaaatgtagg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2942936 |
agaatcagaataccgtcaaactatatgatgcttccacctcaccagtattcttagtggtgattgtagcaactccaaattgagtaagggcttcaaatgtagg |
2942837 |
T |
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| Q |
308 |
gacacttacacttatgatctttcccgggctcctagagaaaaggaaacctgtcaaactcatattcaaaagctttctatagagacaataa |
395 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2942836 |
gacacttacacttatgatctttcccgggctcctagaaaaaaggaaacctgtcaaactaatattcaaaagctttctatagagacaataa |
2942749 |
T |
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