View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_54 (Length: 402)
Name: NF8518A_low_54
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_54 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 14 - 402
Target Start/End: Complemental strand, 2943711 - 2943323
Alignment:
| Q |
14 |
acatcaacattttctgtatacacgtcagaaataagaatatattaagcttcaactttacctgcacaggaatatttggaagcttggtcggtgcttgggtaaa |
113 |
Q |
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| T |
2943711 |
acatcaacattttctgtatacatgtcagaaataacaatatattaagcttcaactttacctgcacaggaatatttggaagcttggtcggtgcttgggtaaa |
2943612 |
T |
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| Q |
114 |
ttttgaatgatcgggttgtaacctcatttggcttcatgatcaaaaattgctcctgaacagtgttcaataaaaattaaatacctaaacttgaagatcaatg |
213 |
Q |
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| T |
2943611 |
ttttgaatgatcgggttgtaatctcatttggcttcatgatcaaaaattgctcctgaacagtgttcaataaaaattaaatacctaaacttgaagatcaatg |
2943512 |
T |
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| Q |
214 |
aaactatacaactggaatggtnnnnnnncaatatgctgaagttgaccaaatggttcagcatagtacctccatcaacgtgatctctttggagcaatcaaac |
313 |
Q |
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| T |
2943511 |
aaactatacaactggaatggtaaaaaaacaatatgctgaagttgaccaaatggttcagcatagtacctccatcaacgtgatctctttggagcaatcaaac |
2943412 |
T |
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| Q |
314 |
tgcaacacaacataaccaaacttgaaacatattctaattaatattgtgtagtgaccttaattaaatataagtatctggacatgcatttg |
402 |
Q |
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| T |
2943411 |
tgcaacacaacataaccaaacttgaaaaatattctaattaatattgtgtagtgaccttaattaaatataagtatctggacatgcatttg |
2943323 |
T |
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