View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_56 (Length: 401)
Name: NF8518A_low_56
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_56 |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 3 - 383
Target Start/End: Original strand, 38935997 - 38936377
Alignment:
| Q |
3 |
actttcgtgtttggtagcaatctcaacgccgaaacggaacaaggcgaaactggttcatctcggagcagtgaaggtcttctcgaaccttctaatcgcgtca |
102 |
Q |
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| T |
38935997 |
actttcgtgtttggtagcaatctcaacgccgaaacggaacaaggcgaaactggttcatctcggagcagtgaaggtcttctcgaaccttctaaccgcgtca |
38936096 |
T |
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| Q |
103 |
catagtttgtgtgtttctgtgacggagaaggtgttgaaacttctagaaactgtgtcgtcgacgaaggaggggaggtcggagatatgtgaagcgccgtcgt |
202 |
Q |
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| T |
38936097 |
cctagtttgtgtgtttctgtgacggagaaggtgttgaaacttctagaaacggtgtcgtcgacgaaggaggggaggtcggagatatgtgaagcgccgtcgt |
38936196 |
T |
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| Q |
203 |
gtgtggcggcgatagtgaacaaagtattgaaagtatccaccggagcgacggagcacgcggttacaatactatggagtgtgtgttatttatttcgtgatca |
302 |
Q |
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| T |
38936197 |
gtgtggtggcgatagtgaacaaagtattgaaagtatccaccgtagcgacggagcacgcggttacaatactatggagtgtgtgttatttatttcgtgatca |
38936296 |
T |
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| Q |
303 |
aaaggcgcaagaagctgttacgaaagcgaatggattaacgaagattttgcttctgatgcaaagtaattgttcgccacaagt |
383 |
Q |
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| T |
38936297 |
aaaggcgcaagaagctgttacgaaagcgaatggattaacgaagattttgcttctgatgcaaagtaattgttcgccacaagt |
38936377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 247 - 383
Target Start/End: Original strand, 43741730 - 43741866
Alignment:
| Q |
247 |
gcgacggagcacgcggttacaatactatggagtgtgtgttatttatttcgtgatcaaaaggcgcaagaagctgttacgaaagcgaatggattaacgaaga |
346 |
Q |
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| T |
43741730 |
gcgacggagcacgcagtaacgacgctgtggagtgtttgttatctgtttcgcgatcaaaaagcacaagaagcggttacgatggcaaatggattaacgaaga |
43741829 |
T |
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| Q |
347 |
ttttgcttctgatgcaaagtaattgttcgccacaagt |
383 |
Q |
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| T |
43741830 |
tattgttgctaatacagagtaattgttctccacaagt |
43741866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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