View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_61 (Length: 385)
Name: NF8518A_low_61
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_61 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 26 - 372
Target Start/End: Original strand, 49391422 - 49391769
Alignment:
| Q |
26 |
caaatgtagtgacgaacaccagatgtttgggtttcctcactattcctggtaaatagtaaccaaaccccaagcaaaatactcccaacatgtgaatgaacta |
125 |
Q |
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| T |
49391422 |
caaatgtagtgacgaaaaccagatgtttgggtttcctcactattcctggtaaatagtaaccaaaccccaagcaaaatactcccaacatgtgaatgaacta |
49391521 |
T |
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| Q |
126 |
gttt-ttacaagatgagggttataaccttaaaaataaaagaactgtagtcaaaactgaaagccaataagttagaattgttgtagaaaagtgtcagagtcg |
224 |
Q |
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| T |
49391522 |
atttattacaagatgagggttataacctaaaaaagaaaagaactgtagttaaaactgaaagccaataagctaaaattgttgcagaaaagtgacagattcg |
49391621 |
T |
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| Q |
225 |
tcatcctctctctcgtgtgacatgttcatcaaatcgataagtggaacaaaattttatcgggctaatgtcattgggcgacgggccttgcaggaaccatcgt |
324 |
Q |
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| T |
49391622 |
tcatcctctctcgcgtgtgacatgttcatcaaatcgagaagttgaacaaaattttattgagctaatgtcattaggcgacgggccttgcaggaaccatcgt |
49391721 |
T |
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| Q |
325 |
gtggttcatttttccattggtcgtggctgtgttccttaaaataatgat |
372 |
Q |
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| T |
49391722 |
gtggttcattttcccattggtcgtggctgtgttccttaaaacaatgat |
49391769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 276 - 337
Target Start/End: Complemental strand, 8542126 - 8542065
Alignment:
| Q |
276 |
ttttatcgggctaatgtcattgggcgacgggccttgcaggaaccatcgtgtggttcattttt |
337 |
Q |
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| T |
8542126 |
ttttattgggctaatgtcattgggtggcgggccttgcaggaaccattgagtgtttcattttt |
8542065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 276 - 337
Target Start/End: Complemental strand, 8607365 - 8607304
Alignment:
| Q |
276 |
ttttatcgggctaatgtcattgggcgacgggccttgcaggaaccatcgtgtggttcattttt |
337 |
Q |
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| T |
8607365 |
ttttattgggctaatgtcattgggtggcgggccttgcaggaaccattgagtgtttcattttt |
8607304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 352
Target Start/End: Original strand, 24881814 - 24881890
Alignment:
| Q |
276 |
ttttatcgggctaatgtcattgggcgacgggccttgcaggaaccatcgtgtggttcatttttccattggtcgtggct |
352 |
Q |
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| T |
24881814 |
ttttattgggttaatgtcactaggtggcgggtcttgcaggaaccattgagtggttcattcttccattagtcgtggct |
24881890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 345
Target Start/End: Complemental strand, 6021128 - 6021087
Alignment:
| Q |
304 |
gggccttgcaggaaccatcgtgtggttcatttttccattggt |
345 |
Q |
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| T |
6021128 |
gggccttgcaggaaccattgagtggttcatttttcaattggt |
6021087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 340
Target Start/End: Original strand, 195075 - 195139
Alignment:
| Q |
276 |
ttttatcgggctaatgtcattgggcgacgggccttgcaggaaccatcgtgtggttcatttttcca |
340 |
Q |
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| T |
195075 |
ttttattgggctaatgtcactgggtggtgggccttgcaagaaccattgagtggttcattcttcca |
195139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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