View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_62 (Length: 384)
Name: NF8518A_low_62
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_62 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 5 - 368
Target Start/End: Complemental strand, 45141971 - 45141608
Alignment:
| Q |
5 |
catattcagtgctctacatgcaagaggcgtggcaacaccattcggtgagattgaattgactctaattccgtaagctccaagctcaccgcacgttgaacgt |
104 |
Q |
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| T |
45141971 |
catattcagtgctctacatgcaagaggcgtggcaacaccatacggtgagattgaattgactctaattccgtaagctccaagctcaccacacgttgaacgt |
45141872 |
T |
|
| Q |
105 |
acaagtcctaagagaccatgtttggacgaaacataatcatggccacgataaccagcaacagaggcagctacactggcagtacaaattatggatccacgga |
204 |
Q |
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| T |
45141871 |
acaagtcctaagagaccatgtttggatgtaacataatcatggccacgatttccagcaacagaggcagctacactggcagtacaaattatggatccacgga |
45141772 |
T |
|
| Q |
205 |
tttttctctccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatccacgagcattaatggccatggtgttgtcaaattcattcatatcaaattc |
304 |
Q |
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| T |
45141771 |
tttttctctccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatccacgaacattaatggccatggtgttgtcaaattcattcagatcaaattc |
45141672 |
T |
|
| Q |
305 |
tagtatgctgctagacatacccccttcaattccagcgttgctaaacataatgtctagggttcca |
368 |
Q |
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| T |
45141671 |
tagtatgctgctagacataccaccttcaattccagcgttgctaaacataatgtctagggttcca |
45141608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 9 - 292
Target Start/End: Complemental strand, 45152612 - 45152329
Alignment:
| Q |
9 |
ttcagtgctctacatgcaagaggcgtggcaacaccattcggtgagattgaattgactctaattccgtaagctccaagctcaccgcacgttgaacgtacaa |
108 |
Q |
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||||||||||||||| |||||| |||||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||| ||||||||| || |||| |
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| T |
45152612 |
ttcagtgctctacataaaagaggtgtggcaacaccagaaggtgaaattgaattaactcttattccataagctccaagctcactgcacgttgagcgaacaa |
45152513 |
T |
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| Q |
109 |
gtcctaagagaccatgtttggacgaaacataatcatggccacgataaccagcaacagaggcagctacactggcagtacaaattatggatccacggatttt |
208 |
Q |
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| |||| |||||||||||||| | ||||||||| || | | ||||||||| || |||| ||||| || || ||||||||||||||||| ||||| |
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| T |
45152512 |
ggcctataagaccatgtttggatgttgtataatcatgtcctgcacatccagcaacaaagccagccacactagccgtgcaaattatggatccacgaatttt |
45152413 |
T |
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| Q |
209 |
tctctccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatccacgagcattaatggccatggtgttgtcaaattcatt |
292 |
Q |
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| T |
45152412 |
tctttccaccataacacgcgcagcgtgcttgatagttgtagctgatccacgaacattaatggccatggtgttgtcaaattcatt |
45152329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 11 - 313
Target Start/End: Complemental strand, 38256429 - 38256127
Alignment:
| Q |
11 |
cagtgctctacatgcaagaggcgtggcaacaccattcggtgagattgaattgactctaattccgtaagctccaagctcaccgcacgttgaacgtacaagt |
110 |
Q |
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||||||||||||||||||||| || |||||| ||| |||||||||||||||||||| ||||| |||||||||||||||||||| | ||| | ||||| |
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| T |
38256429 |
cagtgctctacatgcaagaggtgtagcaacagcatagggtgagattgaattgactctgattccataagctccaagctcaccgcatgctgacctaacaagg |
38256330 |
T |
|
| Q |
111 |
cctaagagaccatgtttggacgaaacataatcatggccacgataaccagcaacagaggcagctacactggcagtacaaattatggatccacggatttttc |
210 |
Q |
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|||| ||||||||||| || | ||||||||| || | | | | ||||| | ||||||||||||| || |||||||| ||||| || ||||||| |
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| T |
38256329 |
cctataagaccatgttttgatgctgtataatcatgtcctgcacatctaccaacaaaaccagctacactggctgtgcaaattattgatcctcgtatttttc |
38256230 |
T |
|
| Q |
211 |
tctccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatccacgagcattaatggccatggtgttgtcaaattcattcatatcaaattctagtat |
310 |
Q |
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| |||||||| | ||||| ||| |||||||||| ||| || |||||| || | ||||||||||||||||||||||| | | |||||||||||| |
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| T |
38256229 |
tttccaccattacacgtgaagcatgcttgatagttgcagctgcaccacgaatgttcacagccatggtgttgtcaaattcatttaggttaaattctagtat |
38256130 |
T |
|
| Q |
311 |
gct |
313 |
Q |
| |
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||| |
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| T |
38256129 |
gct |
38256127 |
T |
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