View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_71 (Length: 369)
Name: NF8518A_low_71
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_71 |
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Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 45945566 - 45945928
Alignment:
| Q |
1 |
agatataataaaaaagacattttactcaaagacatgtacctcaaagatacgtagtttggagtaattgatgacataatatgccatagcaaattcggtttgg |
100 |
Q |
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| T |
45945566 |
agatataataaaaaagacattttactcaaagacatgtacctcgaagatacgtagtttggagtaattgatgacataatatgccatagcaaattcggtttgg |
45945665 |
T |
|
| Q |
101 |
ttggctggagggtacacaggatcaatctccttaacaatgcaaccttgtgaaacaaggatcttacgatgttcttcgggaacatcaggtaagatagcaacaa |
200 |
Q |
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| T |
45945666 |
ttggctggagggtacacaggagcaatctccttaacaatgcaaccttgtgaaacaaggatcttacgatgttcttcaggaacatcaggtaagatagcaacaa |
45945765 |
T |
|
| Q |
201 |
ccaaagggtacatggttttggtttttctcaatcctttggctaaaccaacaacacctttgatgtaatcagcgtttccagcaaggaaagtcacaaaggcacg |
300 |
Q |
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| T |
45945766 |
ccaaagggtacatggttttggtttttctcaatcctttggctaaaccaacaacacctttgatgtaatcagcgtttccagcaaggaaagtcacaaaggcacg |
45945865 |
T |
|
| Q |
301 |
gcctttaccaccgtcgagttttggtttctcaacggtagcattgacggcggtggtggtgattgc |
363 |
Q |
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| T |
45945866 |
gcctttaccaccgtcgagttttggtttctcaacggtagcattcacggcggtggtggtgattgc |
45945928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 47 - 297
Target Start/End: Complemental strand, 55221583 - 55221333
Alignment:
| Q |
47 |
atacgtagtttggagtaattgatgacataatatgccatagcaaattcggtttggttggctggagggtacacaggatcaatctccttaacaatgcaacctt |
146 |
Q |
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| T |
55221583 |
atacgtagtttggagtagttgatgacataataagccatagcaaattgggtttgattcttaggagggtaaacaggtgcaatctctctaacaatgcaacctt |
55221484 |
T |
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| Q |
147 |
gtgaaacaaggatcttacgatgttcttcgggaacatcaggtaagatagcaacaaccaaagggtacatggttttggtttttctcaatcctttggctaaacc |
246 |
Q |
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| T |
55221483 |
gagcgatgagaatattcctatgttgctcaggaacatcaggcaacactgcaaccactagagggtacatggttttgaccttacgaagacctttggctaaacc |
55221384 |
T |
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| Q |
247 |
aacaacacctttgatgtaatcagcgtttccagcaaggaaagtcacaaaggc |
297 |
Q |
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| T |
55221383 |
aaccacacctttgacatagtcaccatttccaacaaggaaggtcacaaaggc |
55221333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 47 - 300
Target Start/End: Complemental strand, 37697720 - 37697467
Alignment:
| Q |
47 |
atacgtagtttggagtaattgatgacataatatgccatagcaaattcggtttggttggctggagggtacacaggatcaatctccttaacaatgcaacctt |
146 |
Q |
| |
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| T |
37697720 |
atacgtaatttggagtagttgatgacataataagccatggcaaactgagtttggttttctggaggataaacaggttcaatttctctaacaatgcaacctt |
37697621 |
T |
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| Q |
147 |
gtgaaacaaggatcttacgatgttcttcgggaacatcaggtaagatagcaacaaccaaagggtacatggttttggtttttctcaatcctttggctaaacc |
246 |
Q |
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| T |
37697620 |
gagaggtgagaatattcctatgttcttgaggaacatcaggtaacactgcaaccactaaaggatacatggttttgactttacgaagacctttagctaaacc |
37697521 |
T |
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| Q |
247 |
aacaacacctttgatgtaatcagcgtttccagcaaggaaagtcacaaaggcacg |
300 |
Q |
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| T |
37697520 |
aacaacacccttcacataatcaccatttccagcaaggaaggtgacgaaggcacg |
37697467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 47 - 300
Target Start/End: Original strand, 37687798 - 37688052
Alignment:
| Q |
47 |
atacgtagtttggagtaattgatgacataatatgccatagcaaattcggtttggttggc-tggagggtacacaggatcaatctccttaacaatgcaacct |
145 |
Q |
| |
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||||||| ||||||||| |||||||||||||| ||||| ||||| | |||||||| | |||||| || ||||| ||||| || |||||||||||||| |
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| T |
37687798 |
atacgtaatttggagtagttgatgacataataagccatggcaaactgagtttggttttcttggaggataaacaggttcaatttctctaacaatgcaacct |
37687897 |
T |
|
| Q |
146 |
tgtgaaacaaggatcttacgatgttcttcgggaacatcaggtaagatagcaacaaccaaagggtacatggttttggtttttctcaatcctttggctaaac |
245 |
Q |
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| T |
37687898 |
tgagaggtgagaatattcctatgttcttgaggaacatcaggtaacactgcaaccactaaaggatacatggttttgactttacgaagacctttagctaaac |
37687997 |
T |
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| Q |
246 |
caacaacacctttgatgtaatcagcgtttccagcaaggaaagtcacaaaggcacg |
300 |
Q |
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|||||||||| || | |||||| | |||||||||||||| || || |||||||| |
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| T |
37687998 |
caacaacacccttcacataatcaccatttccagcaaggaaggtgacgaaggcacg |
37688052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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