View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8518A_low_73 (Length: 367)

Name: NF8518A_low_73
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8518A_low_73
NF8518A_low_73
[»] chr2 (27 HSPs)
chr2 (11-348)||(39215557-39215894)
chr2 (15-345)||(39161771-39162104)
chr2 (15-345)||(39207090-39207423)
chr2 (11-150)||(39370033-39370172)
chr2 (11-343)||(39388918-39389255)
chr2 (11-130)||(39192439-39192558)
chr2 (11-130)||(39198119-39198238)
chr2 (175-342)||(39192266-39192436)
chr2 (175-342)||(39197946-39198116)
chr2 (175-277)||(39222932-39223037)
chr2 (11-150)||(39414761-39414900)
chr2 (11-126)||(39468264-39468379)
chr2 (208-345)||(39370254-39370394)
chr2 (11-99)||(39137807-39137895)
chr2 (11-130)||(39222810-39222929)
chr2 (16-129)||(39473409-39473522)
chr2 (11-126)||(39397852-39397967)
chr2 (11-129)||(39459177-39459295)
chr2 (204-341)||(39381275-39381412)
chr2 (15-130)||(39381510-39381625)
chr2 (14-129)||(39421832-39421947)
chr2 (204-249)||(39421688-39421733)
chr2 (12-110)||(39494461-39494559)
chr2 (204-241)||(39468448-39468485)
chr2 (11-63)||(39152509-39152561)
chr2 (283-336)||(39223101-39223154)
chr2 (197-241)||(39459387-39459431)
[»] chr6 (2 HSPs)
chr6 (17-126)||(16113230-16113339)
chr6 (204-241)||(16113441-16113478)
[»] chr7 (2 HSPs)
chr7 (11-99)||(19807757-19807845)
chr7 (205-301)||(19807963-19808059)
[»] chr5 (2 HSPs)
chr5 (204-345)||(33561135-33561281)
chr5 (209-249)||(17059602-17059642)
[»] chr8 (1 HSPs)
chr8 (220-335)||(45342187-45342305)


Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 11 - 348
Target Start/End: Original strand, 39215557 - 39215894
Alignment:
Q  11 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215557 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttg 39215656  T
Q  111 gaggacaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattgaagaaacacaatcggg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215657 gaggacaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattgaagaaacacaatcggg 39215756  T
Q  211 taaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgttta 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215757 taaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgttta 39215856  T
Q  311 aaaatatttttaatcatgttaatgttttatgtctttgt 348  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39215857 aaaatatttttaatcatgttaatgttttatgtctttgt 39215894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 15 - 345
Target Start/End: Original strand, 39161771 - 39162104
Alignment:
Q  15 agaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggagg 114  Q
    |||| |||||||||||||||||||| ||||| |||   |||||| ||||| |||||||| | |  |||||| |||| |||||||| ||||| |||| |||    
T  39161771 agaaacaatttgaaggacggtggaatgaactggagacgaaagagtataagctcaaagtaaatgagaaggagctcaacttaaaagaaaagcaatttgaagg 39161870  T
Q  115 acaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatat---tgaagaaacacaatcgggt 211  Q
    |||||||||||||||||||| |||| |||| ||||| |||  || ||  | | ||| || ||||||||||||||||||   ||| |||| | |||| |||    
T  39161871 acaagtcaaggatcctaagtcaaagatgaataaatttgatggacaactaaaggagcctgagtcaaggaaaaaatatattgatgaggaaaaagaatccggt 39161970  T
Q  212 aaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaa 311  Q
    |||||||||| ||||||||| ||||||||||| ||| | || ||| |||||| ||||||||||||| | |||||  | || ||||||| || || |||||    
T  39161971 aaatgttcttcttcatctagattattgaaagaattttattataactgttccttttaatgatgatgatattttttgaatcctgatctacttaattttttaa 39162070  T
Q  312 aaatatttttaatcatgttaatgttttatgtctt 345  Q
    | |  |||||| ||||||||||||| ||||||||    
T  39162071 acacgtttttactcatgttaatgttgtatgtctt 39162104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 15 - 345
Target Start/End: Complemental strand, 39207423 - 39207090
Alignment:
Q  15 agaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggagg 114  Q
    |||| |||||||||||||||||||| ||||| |||   |||||| ||||| |||||||| | |  |||||| |||| |||||||| ||||| |||| |||    
T  39207423 agaaacaatttgaaggacggtggaatgaactggagacgaaagagtataagctcaaagtaaatgagaaggagctcaacttaaaagaaaagcaatttgaagg 39207324  T
Q  115 acaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattgaaga---aacacaatcgggt 211  Q
    |||||||||||||||||||| |||| |||| ||||| |||  || ||  | | ||| || ||||||||||||||||||||| ||   || | |||| |||    
T  39207323 acaagtcaaggatcctaagtcaaagatgaataaatttgatggacaactaaaggagcctgagtcaaggaaaaaatatattgatgaggaaaaagaatccggt 39207224  T
Q  212 aaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaa 311  Q
    |||||||||| ||||||||| ||||||||||| ||| | || ||| |||||| ||||||||||||| | |||||  | || ||||||| || || |||||    
T  39207223 aaatgttcttcttcatctagattattgaaagaattttattataactgttccttttaatgatgatgatattttttgaatcctgatctacttaattttttaa 39207124  T
Q  312 aaatatttttaatcatgttaatgttttatgtctt 345  Q
    | |  |||||| ||||||||||||| ||||||||    
T  39207123 acacgtttttactcatgttaatgttgtatgtctt 39207090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 39370033 - 39370172
Alignment:
Q  11 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttg 110  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| ||||||||| | |||||||||||||||||||    
T  39370033 aaagaaaagcaatttgaaggacggtggaaagaacttgagttaaaagagaacaagttcatagtgcaggtgaaggagttcgaattaaaagagaagcagtttg 39370132  T
Q  111 gaggacaagtcaaggatcctaagttaaagttgaaaaaatt 150  Q
    || |||||||||||| || | ||| |||| |||| |||||    
T  39370133 gaagacaagtcaagggtcttgagtcaaagatgaataaatt 39370172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 11 - 343
Target Start/End: Complemental strand, 39389255 - 39388918
Alignment:
Q  11 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttg 110  Q
    |||||| ||| |||| || |||| ||||| ||||| ||||| |||||| |||||||||||||| |||| |||||| |||| |||||||| ||||||||||    
T  39389255 aaagagcagcgatttaaaagacgatggaacgaactggagttgaaagagtataagttcaaagtaaaggtgaaggagctcaacttaaaagaaaagcagtttg 39389156  T
Q  111 gaggacaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattga---agaaacacaatc 207  Q
     ||| |||||||| |||||| ||| |||| |||| ||||| |||  || |   | | |||  | |||||||||||||||| ||||    |||| | ||||    
T  39389155 aagggcaagtcaacgatcctgagtcaaagctgaataaatttgatggacaaataaaggagcccgagtcaaggaaaaaatattttgatggggaaaaagaatc 39389056  T
Q  208 gggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgaca--atttttataacccgatctacatagtt 305  Q
     |||||||||||||||||||| |||||||||||||| |||   |||||| |||||||||||||||||||| |   |||||||| |  ||||||| || ||    
T  39389055 cggtaaatgttcttattcatccagtttattgaaagaatttttttacaactgttcctcttaatgatgatgatattttttttatagcttgatctacttaatt 39388956  T
Q  306 gtttaaaaatatttttaatcatgttaatgttttatgtc 343  Q
       || |||  |||||||||||||||||||| ||||||    
T  39388955 ccatagaaacgtttttaatcatgttaatgttgtatgtc 39388918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 39192558 - 39192439
Alignment:
Q  11 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttg 110  Q
    |||||||||||||| |||||||| ||||  |||||||||| |||||||||||||||||||| | |||| |||||| |||| |||||||| ||||||||||    
T  39192558 aaagagaagcaattagaaggacgatggagtgaacttgagtcaaaagagaataagttcaaagcaaaggtgaaggagctcaacttaaaagaaaagcagtttg 39192459  T
Q  111 gaggacaagtcaaggatcct 130  Q
     ||||| |||||||||||||    
T  39192458 aaggactagtcaaggatcct 39192439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 39198238 - 39198119
Alignment:
Q  11 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttg 110  Q
    |||||||||||||| |||||||| ||||  |||||||||| |||||||||||||||||||| | |||| |||||| |||| |||||||| ||||||||||    
T  39198238 aaagagaagcaattagaaggacgatggagtgaacttgagtcaaaagagaataagttcaaagcaaaggtgaaggagctcaacttaaaagaaaagcagtttg 39198139  T
Q  111 gaggacaagtcaaggatcct 130  Q
     ||||| |||||||||||||    
T  39198138 aaggactagtcaaggatcct 39198119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 175 - 342
Target Start/End: Complemental strand, 39192436 - 39192266
Alignment:
Q  175 gtcaaggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 271  Q
    |||||||||||| |||||||| ||   || | |||| ||||||||| |||||||||||  |||||||| ||| ||||| | ||||  |||||||||||||    
T  39192436 gtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgacagaatttcattgcaactattcctcttaatga 39192337  T
Q  272 tgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgt 342  Q
    |||||| | ||||||||||  ||||||| || || |||||||| ||||||||||||||||||||| |||||    
T  39192336 tgatgatattttttataacatgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgt 39192266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 175 - 342
Target Start/End: Complemental strand, 39198116 - 39197946
Alignment:
Q  175 gtcaaggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 271  Q
    |||||||||||| |||||||| ||   || | |||| ||||||||| |||||||||||  |||||||| ||| ||||| | ||||  |||||||||||||    
T  39198116 gtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgacagaatttcattgcaactattcctcttaatga 39198017  T
Q  272 tgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgt 342  Q
    |||||| | ||||||||||  ||||||| || || |||||||| ||||||||||||||||||||| |||||    
T  39198016 tgatgatattttttataacatgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgt 39197946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 175 - 277
Target Start/End: Original strand, 39222932 - 39223037
Alignment:
Q  175 gtcaaggaaaaaatatattga---agaaacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 271  Q
    |||||||||||||||||||||   ||||| | |||||||||||||||||||||||||| ||||||||||| | ||||  |||||| ||||||||||||||    
T  39222932 gtcaaggaaaaaatatattgatggagaaaaagaatcgggtaaatgttcttattcatcttgtttattgaaaaaatttctttacaactgttcctcttaatga 39223031  T
Q  272 tgatga 277  Q
    ||||||    
T  39223032 tgatga 39223037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 39414900 - 39414761
Alignment:
Q  11 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttg 110  Q
    ||||||||||||||||||| ||| |||||||||||  ||  ||| ||||||||||||||| ||| ||| || ||| |||||||||| ||||| |||||||    
T  39414900 aaagagaagcaatttgaagaacgatggaaagaactcaagacaaatgagaataagttcaaactactggtcaaagagctcaagttaaatgagaaacagtttg 39414801  T
Q  111 gaggacaagtcaaggatcctaagttaaagttgaaaaaatt 150  Q
     ||||||||| ||||||||| ||| |||| || |||||||    
T  39414800 aaggacaagttaaggatcctgagtcaaagctggaaaaatt 39414761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 39468264 - 39468379
Alignment:
Q  11 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttg 110  Q
    ||||| ||||||||||| | |||||| |||||| |  ||| ||||||||||  |||||||||| |||| ||||||||||||||||||||||||||| |||    
T  39468264 aaagataagcaatttgatgaacggtgtaaagaattgaagtcaaaagagaatcggttcaaagtaaaggtgaaggagttcaagttaaaagagaagcagattg 39468363  T
Q  111 gaggacaagtcaagga 126  Q
     |||||||||||||||    
T  39468364 aaggacaagtcaagga 39468379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 208 - 345
Target Start/End: Original strand, 39370254 - 39370394
Alignment:
Q  208 gggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctctta---atgatgatgacaatttttataacccgatctacatagt 304  Q
    ||||||||||||||||||||||||||||||||   | ||||| || ||  ||||| ||||   |||||||||| | |||||||||||||||||| |||||    
T  39370254 gggtaaatgttcttattcatctagtttattgatttaatttcattataattgttccacttaatgatgatgatgatattttttataacccgatctatatagt 39370353  T
Q  305 tgtttaaaaatatttttaatcatgttaatgttttatgtctt 345  Q
    | | |||||| ||| ||||||||||||||||| ||||||||    
T  39370354 tctataaaaacattcttaatcatgttaatgttgtatgtctt 39370394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 39137807 - 39137895
Alignment:
Q  11 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaaga 99  Q
    |||||||||||| |||||| ||||||||||||||| |||| ||||||||||||||||||||||| ||| || ||| |||||||||||||    
T  39137807 aaagagaagcaaattgaagaacggtggaaagaactcgagtcaaaagagaataagttcaaagtactggtcaaagagctcaagttaaaaga 39137895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 39222810 - 39222929
Alignment:
Q  11 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttg 110  Q
    ||||||||||||||||||| ||| |||||  ||||||||| | |||||||||||||||||| | |||| |||||| |||| || ||||| |||  |||||    
T  39222810 aaagagaagcaatttgaagaacgatggaataaacttgagtcagaagagaataagttcaaagcaaaggtgaaggagctcaacttcaaagaaaagtggtttg 39222909  T
Q  111 gaggacaagtcaaggatcct 130  Q
     |||||||||||||||||||    
T  39222910 aaggacaagtcaaggatcct 39222929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 39473522 - 39473409
Alignment:
Q  16 gaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggagga 115  Q
    |||||||||||||| ||| ||||||||||| |||| |||||||||||||||||||||||  || |||    |||||||||||||||||||| ||| ||||    
T  39473522 gaagcaatttgaagaacgatggaaagaactcgagtcaaaagagaataagttcaaagtactagtgaagtcactcaagttaaaagagaagcaggttgaagga 39473423  T
Q  116 caagtcaaggatcc 129  Q
     ||||| |||||||    
T  39473422 gaagtcgaggatcc 39473409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 11 - 126
Target Start/End: Complemental strand, 39397967 - 39397852
Alignment:
Q  11 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttg 110  Q
    ||||| |||||| |||||| |||||||||| ||||||||| |||||||||| ||||||||||| ||||  ||||| |  ||||||||||||||||| |||    
T  39397967 aaagataagcaaattgaagaacggtggaaaaaacttgagtcaaaagagaatcagttcaaagtaaaggtgcaggagcttgagttaaaagagaagcaggttg 39397868  T
Q  111 gaggacaagtcaagga 126  Q
     ||| | |||||||||    
T  39397867 caggtcgagtcaagga 39397852  T

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Target: chr2; HSP #18
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 39459177 - 39459295
Alignment:
Q  11 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttg 110  Q
    ||||||||||||||||||| || | |||||||| | ||     |||||||||||||||||||||  || || ||| ||||||||||||| ||||| ||||    
T  39459177 aaagagaagcaatttgaagaacagcggaaagaattcgatgctgaagagaataagttcaaagtactagtgaaagagctcaagttaaaagacaagcaatttg 39459276  T
Q  111 gaggacaagtcaaggatcc 129  Q
     ||||||||||||||||||    
T  39459277 aaggacaagtcaaggatcc 39459295  T

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Target: chr2; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 204 - 341
Target Start/End: Complemental strand, 39381412 - 39381275
Alignment:
Q  204 aatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatag 303  Q
    |||| ||||||||||||||||||| ||||||| ||||||| ||||| | ||   ||| || ||||||||| ||| | ||||  ||||  ||||||||||     
T  39381412 aatctggtaaatgttcttattcatatagtttactgaaagaatttcatttcagttgtttcttttaatgatgttgatacttttattaacttgatctacataa 39381313  T
Q  304 ttgtttaaaaatatttttaatcatgttaatgttttatg 341  Q
    ||  |||||||||||||||||| |||||||||| ||||    
T  39381312 ttcattaaaaatatttttaatcgtgttaatgttgtatg 39381275  T

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Target: chr2; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 39381625 - 39381510
Alignment:
Q  15 agaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggagg 114  Q
    ||||| ||||||||| |||   ||||||||  || | |||||||||| ||||||||||| || | || ||| |||||||||||||||||||||||| | |    
T  39381625 agaagaaatttgaagaacgaatgaaagaacacgaatcaaaagagaatgagttcaaagtaaagatgaatgagctcaagttaaaagagaagcagtttgaaag 39381526  T
Q  115 acaagtcaaggatcct 130  Q
    ||||| ||||||||||    
T  39381525 acaagacaaggatcct 39381510  T

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Target: chr2; HSP #21
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 14 - 129
Target Start/End: Complemental strand, 39421947 - 39421832
Alignment:
Q  14 gagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggag 113  Q
    |||||| ||||||||| ||  |||||||||||  ||| |||||||||||||||||||||||  || || ||| |||| |||||||| ||||  |||||||    
T  39421947 gagaagaaatttgaagaacaatggaaagaactcaagtcaaaagagaataagttcaaagtactagtgaaagagctcaaattaaaagacaagcgatttggag 39421848  T
Q  114 gacaagtcaaggatcc 129  Q
     || ||||||||||||    
T  39421847 cactagtcaaggatcc 39421832  T

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Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 39421733 - 39421688
Alignment:
Q  204 aatcgggtaaatgttcttattcatctagtttattgaaagagtttca 249  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||    
T  39421733 aatctggtaaatgttcttattcatctaatttattgaaagagtttca 39421688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 39494559 - 39494461
Alignment:
Q  12 aagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttg 110  Q
    ||||||| ||||||||||||||  ||||||| |  |||| |||||| || |||||||||| ||| || |||||| | |||  |||||||||||||||||    
T  39494559 aagagaaacaatttgaaggacgagggaaagagccagagtcaaaagacaagaagttcaaagcacacgtgaaggagctgaagccaaaagagaagcagtttg 39494461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 39468448 - 39468485
Alignment:
Q  204 aatcgggtaaatgttcttattcatctagtttattgaaa 241  Q
    |||| |||||||||||||||||||||||||||||||||    
T  39468448 aatctggtaaatgttcttattcatctagtttattgaaa 39468485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 39152509 - 39152561
Alignment:
Q  11 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataa 63  Q
    ||||||||||||||||||  |||||||||||| || |||| ||||||||||||    
T  39152509 aaagagaagcaatttgaaaaacggtggaaagagctcgagtcaaaagagaataa 39152561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 336
Target Start/End: Original strand, 39223101 - 39223154
Alignment:
Q  283 tttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgtt 336  Q
    |||| |||| ||||||| || || ||||| ||||||||||||||||||||||||    
T  39223101 tttacaacctgatctacttaattctttaagaatatttttaatcatgttaatgtt 39223154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 39459387 - 39459431
Alignment:
Q  197 gaaacacaatcgggtaaatgttcttattcatctagtttattgaaa 241  Q
    |||||| |||||||||| ||||||||||||| ||| |||||||||    
T  39459387 gaaacagaatcgggtaagtgttcttattcatttagcttattgaaa 39459431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 16113230 - 16113339
Alignment:
Q  17 aagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggac 116  Q
    ||||||||||||| ||||||||||||||| || | |||||||||| ||||||||||| |||  |||||| |||||||||||||||||||| ||| || ||    
T  16113230 aagcaatttgaagaacggtggaaagaactcgaatcaaaagagaatcagttcaaagtaaaggagaaggagctcaagttaaaagagaagcagattgaagtac 16113329  T
Q  117 aagtcaagga 126  Q
    ||||||||||    
T  16113330 aagtcaagga 16113339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 16113441 - 16113478
Alignment:
Q  204 aatcgggtaaatgttcttattcatctagtttattgaaa 241  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  16113441 aatcgggtaagtgttctcattcatctagtttattgaaa 16113478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 19807757 - 19807845
Alignment:
Q  11 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaaga 99  Q
    |||||||| ||| |||||| | ||||||||||||| |||| ||||||||||||||||||||||| ||| || ||| |||||||||||||    
T  19807757 aaagagaatcaaattgaagaaaggtggaaagaactcgagtcaaaagagaataagttcaaagtactggtcaaagagctcaagttaaaaga 19807845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 301
Target Start/End: Original strand, 19807963 - 19808059
Alignment:
Q  205 atcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacat 301  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||| | || | ||| || || |||||| ||| | |||| |||||| |||||||||    
T  19807963 atcgggtaaaagttcttattcatctagtttatagaaggagtttcatttcagctgtttctttttatgatgttgatatttttaataacctgatctacat 19808059  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 204 - 345
Target Start/End: Original strand, 33561135 - 33561281
Alignment:
Q  204 aatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaattt----ttataacccgatctac 299  Q
    |||| ||||||||||||| ||||||||||||||||||||| ||| | || ||  |||||||| | |||||||||  ||||    ||||| || |||||||    
T  33561135 aatccggtaaatgttcttcttcatctagtttattgaaagaattttattataagtgttcctctcagtgatgatgatgattttttgttatatcctgatctac 33561234  T
Q  300 atagttgtttaaaaatatttttaatcatgttaatgttt-tatgtctt 345  Q
     || |  |||||| | |||||||||||||||||||||| ||||||||    
T  33561235 ttaatcctttaaacacatttttaatcatgttaatgtttgtatgtctt 33561281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 17059602 - 17059642
Alignment:
Q  209 ggtaaatgttcttattcatctagtttattgaaagagtttca 249  Q
    |||||||||| |||||||||||||||||| ||||| |||||    
T  17059602 ggtaaatgttgttattcatctagtttattaaaagaatttca 17059642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 335
Target Start/End: Original strand, 45342187 - 45342305
Alignment:
Q  220 ttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaaaa---ata 316  Q
    |||||||||||||||||||||||| ||||| | ||||  || || ||  ||||| ||| | |||| |||||| |||||||||| |  |||||||   |||    
T  45342187 ttattcatctagtttattgaaagaatttcatttcaactatttcttttgttgatgttgatatttttaataacctgatctacatattcttttaaaaaatata 45342286  T
Q  317 tttttaatcatgttaatgt 335  Q
    | |||||| ||||||||||    
T  45342287 tgtttaatgatgttaatgt 45342305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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