View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_8 (Length: 562)
Name: NF8518A_low_8
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-135; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 282 - 553
Target Start/End: Original strand, 27325941 - 27326210
Alignment:
| Q |
282 |
cttaaagatttcactatcaccaactcttatgtgggcccatccaatttggagccactcgttttttcttctgatgcaaccatagattctacctttaaagatg |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
27325941 |
cttaaagatttcactatcaccaactcttatgtgggcccatccaatttggagccactcgttttttcttctgatgcaaccaaagattctacctttaaagatg |
27326040 |
T |
|
| Q |
382 |
ctaatttttcagaagcagtgaaatatataagccatattttgatggaaaaagattttgaacaaaaaccatgtatgtgttatgacccgcttagtcttctact |
481 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27326041 |
ctaatttttcagaagcagtgaaatatataagccatattttgatggaaaaagattttgaacaaaaaccatgtatgtgttatgacccgcttagtcttctact |
27326140 |
T |
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| Q |
482 |
gagaaaattttctttgatgctttagaattaaatttgtctcttgcacctaatttacaccctcttgatattctt |
553 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| || ||||| |
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| T |
27326141 |
gagaaaattttctttgatgctttagaattaaatttg--tcttgcacctaattcacaccctcttcatgttctt |
27326210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 27324736 - 27325005
Alignment:
| Q |
18 |
caaaattgtgttagccaattggacttggacagttgggttgctgggtgggtgtgtttgatatgttactaaatcaataatgggtgggtgttattagcagtat |
117 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
27324736 |
caaaattgtgttagccaattgggtttgggcagttgggttgctgggtgggtgtgtttgatatgttactaaagcaatagtgggtgggtgttattagcagtat |
27324835 |
T |
|
| Q |
118 |
atgtatatatatattnnnnnnnnnnnnnnnnntttatgcatgcaggagcccccacaatcatatgagtggctcc-----tgttatggatccaaattttgtt |
212 |
Q |
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|| ||||||||| ||| |||||| |||||||||||||||||| ||||||||||| || ||||||||||||||||||| |
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| T |
27324836 |
at----atatatattaaaaaagtttagaaaaatttgtgcatgtaggagcccccacaatcatgtgagtggctccgcccctgctatggatccaaattttgtt |
27324931 |
T |
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| Q |
213 |
ggattcgaaacaacctgcaaattcgatgaccatggtaacctaatctttctctctgatccaaatccaaaacttaa |
286 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||| |
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| T |
27324932 |
ggattcgaaacaacctgcaaattcgatgaccatgttaacctaatctttctctctgatccaaattcaaaccttaa |
27325005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 154 - 190
Target Start/End: Original strand, 12587768 - 12587804
Alignment:
| Q |
154 |
tgcatgcaggagcccccacaatcatatgagtggctcc |
190 |
Q |
| |
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|||| |||||||||||||||||||| ||||||||||| |
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| T |
12587768 |
tgcaggcaggagcccccacaatcatgtgagtggctcc |
12587804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 194 - 553
Target Start/End: Original strand, 41596586 - 41596949
Alignment:
| Q |
194 |
tatggatccaaattttgttggattcgaaacaacctgcaaattcgatgaccatggtaacctaatctttctctctgatccaaatccaaaacttaaagatttc |
293 |
Q |
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||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||| ||| | |||||| |
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| T |
41596586 |
tatggatccgaattttgtcggattcgaaacaacctacaaattcgatgaccatggtaacttaatccttctctctgatccaaatccaaaccttgacgatttc |
41596685 |
T |
|
| Q |
294 |
actatcaccaactcttatgtgggcccatccaatttggagccactcgttttttcttctgatgcaaccatagattctacctttaaagatgctaatttttcag |
393 |
Q |
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|| ||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||| |||||| ||||||||||||| |||||||| ||||||||| |
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| T |
41596686 |
accatcaccaacccttatgtgggcccatccaattcggagccactagttttttcttctgatacaaccaaagattctacctttgaagatgctgatttttcag |
41596785 |
T |
|
| Q |
394 |
aagcagtgaaatatataagccatattttgatggaaaaagattttgaacaaaaaccatgtatgtgttatgacccgcttagtcttc----tactgagaaaat |
489 |
Q |
| |
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|| ||||||||||||||||||| ||||| |||||| |||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
41596786 |
aaacagtgaaatatataagccagattttaatggaagaagaatttgaacaaaaaccatgtatgtgttatgacccacttagtcttcaacatactgagaaaat |
41596885 |
T |
|
| Q |
490 |
tttctttgatgctttagaattaaatttgtctcttgcacctaatttacaccctcttgatattctt |
553 |
Q |
| |
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||||||||||||||| |||| ||||||| ||||| |||||||| ||||||||||||| ||||| |
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| T |
41596886 |
tttctttgatgctttggaatcaaatttgcctctttcacctaatcaacaccctcttgatgttctt |
41596949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 131; Significance: 1e-67; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 194 - 494
Target Start/End: Original strand, 28916174 - 28916484
Alignment:
| Q |
194 |
tatggatccaaattttgttggattcgaaacaacctgcaaattcgatgaccatggtaacctaatctttctctctgatc------caaatccaaaacttaaa |
287 |
Q |
| |
|
||||||||| |||||||||| |||||||| |||| ||||||||||||||| |||||||||||| |||||||||||| |||||||||| ||||| |
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| T |
28916174 |
tatggatccgaattttgttgatttcgaaaccacctacaaattcgatgaccaaggtaacctaatccttctctctgatccagatccaaatccaaaccttaac |
28916273 |
T |
|
| Q |
288 |
gatttcactatcaccaactcttatgtgggcccatccaatttggagccactcgttttttcttctgatgcaaccatagattctacctttaaagatgctaatt |
387 |
Q |
| |
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|||||||| ||||||||| |||| ||||||| | ||| || | ||||| ||||||||||||| ||||||||| ||||||||| ||| |||||||| || |
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| T |
28916274 |
gatttcaccatcaccaacccttacgtgggccaacccatttcgaagccatccgttttttcttctaatgcaaccaaagattctacatttgaagatgctgatc |
28916373 |
T |
|
| Q |
388 |
tttcagaagcagtgaaatatataagccatattttgatggaaaaagattttgaacaaaaaccatgtatgtgttatgacccgcttagtcttc----tactga |
483 |
Q |
| |
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|||||||| || |||||||||||||||| ||| | ||| | ||||||||||||||| ||||||||||||||||||||| |||||||||| |||||| |
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| T |
28916374 |
tttcagaaacattgaaatatataagccagattctaatgttagaagattttgaacaaataccatgtatgtgttatgacccacttagtcttcaacatactga |
28916473 |
T |
|
| Q |
484 |
gaaaattttct |
494 |
Q |
| |
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||||||||||| |
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| T |
28916474 |
gaaaattttct |
28916484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 154 - 190
Target Start/End: Complemental strand, 6900386 - 6900350
Alignment:
| Q |
154 |
tgcatgcaggagcccccacaatcatatgagtggctcc |
190 |
Q |
| |
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|||| |||||||||||||||||||| ||||||||||| |
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|
| T |
6900386 |
tgcaggcaggagcccccacaatcatgtgagtggctcc |
6900350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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