View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_85 (Length: 354)
Name: NF8518A_low_85
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_85 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 41080560 - 41080391
Alignment:
| Q |
14 |
agacgtatgagtccgaataagctataccttcatttcagttaacaatataccagagctttaaagcaaaaatatgtcatgaaaggctgtttagttaaagaag |
113 |
Q |
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| T |
41080560 |
agacgtatgagtccgaataagctatacattcatttcggttaacaatataccagagctttaaagcaaaaatatgtcatgaaaggctgtttagttaaagaag |
41080461 |
T |
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| Q |
114 |
cgagagtaaaccactaaattggtctctatatttgtaagtcttgaccaaaaaattatcttgtaaaactatgg |
184 |
Q |
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| T |
41080460 |
caagagtaaaccattaaatt-gtctctatatttgtaagtcttgaccaaaaaattatcttgtaaaactatgg |
41080391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 204 - 348
Target Start/End: Complemental strand, 41080365 - 41080221
Alignment:
| Q |
204 |
ggggtgaattgggtgaaagttacaaacctaagtgcataaacgcagtgaccataacatggttactctccttgacatcttccacaaaaacgtgaatatttgg |
303 |
Q |
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| T |
41080365 |
ggggtgaattgggtgaaagttacaaacctaagtgcataaacgcagtgaccataacatggttactctccttgacatcttccacgaaaacgtgaatatttgg |
41080266 |
T |
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| Q |
304 |
acccattgcatccatcacgctttgccaaaactttatgatgctctg |
348 |
Q |
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| T |
41080265 |
acccattgcatccatcacgctttgccaaaactttatgatgctctg |
41080221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 32942498 - 32942462
Alignment:
| Q |
117 |
gagtaaaccactaaattggtctctatatttgtaagtc |
153 |
Q |
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| T |
32942498 |
gagtaaaccattaaattgatctctatatttgtaagtc |
32942462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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