View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8518A_low_86 (Length: 352)

Name: NF8518A_low_86
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8518A_low_86
NF8518A_low_86
[»] chr5 (2 HSPs)
chr5 (8-346)||(41140680-41141019)
chr5 (71-129)||(12914332-12914390)
[»] chr8 (5 HSPs)
chr8 (213-302)||(35907593-35907688)
chr8 (214-311)||(35915196-35915298)
chr8 (71-130)||(40395940-40395999)
chr8 (70-131)||(404026-404087)
chr8 (79-125)||(6048665-6048711)
[»] chr4 (3 HSPs)
chr4 (213-302)||(33910986-33911081)
chr4 (86-129)||(42508022-42508065)
chr4 (79-124)||(13293363-13293408)
[»] chr1 (2 HSPs)
chr1 (88-124)||(11022617-11022653)
chr1 (81-118)||(7026516-7026553)
[»] chr3 (1 HSPs)
chr3 (79-125)||(12764465-12764511)
[»] chr6 (2 HSPs)
chr6 (96-124)||(12424649-12424677)
chr6 (75-127)||(28956125-28956177)


Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 8 - 346
Target Start/End: Complemental strand, 41141019 - 41140680
Alignment:
Q  8 tggtgttttatggttacaatttcaacagaatctactctttctctctcattttgaggaaaagcctttttatatgtgtgaccaaacactgttcatttatgtt 107  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  41141019 tggtgttttatggttacaatttcaacataatctactctttctctctcattttgaggaaaagcctttttatatgtttgaccaaacactgttcatttatgtt 41140920  T
Q  108 tgtgactataaaagaatgcctctttggaagcacacaattaatagaacctaattgctaatcatctaatcattgaagtccaatacaaatcgatactttaaat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41140919 tgtgactataaaagaatgcctctttggaagcacacaattaatagaacctaattgctaatcatctaatcattgaagtccaatacaaatagatactttaaat 41140820  T
Q  208 gtcaaccctgattcattaattttagcttccaatcttctattatctccattgacacactcatcttgagcagaagaatctattacaacacaggtctcaagtt 307  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41140819 gtcaactctgattcattagttttagcttccaatcttctattatctccattgacacactcatcttgagcagaagaatctattacaacacaggtctcaagtt 41140720  T
Q  308 ctt-cttattaaacgaattacttgaaccttaacttctaaa 346  Q
    ||| ||||||||||||||||||||||||||||||||||||    
T  41140719 cttccttattaaacgaattacttgaaccttaacttctaaa 41140680  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 129
Target Start/End: Original strand, 12914332 - 12914390
Alignment:
Q  71 tttttatatgtgtgaccaaacactgttcatttatgtttgtgactataaaagaatgcctc 129  Q
    ||||||||||||||| |||||||| || |||||| ||||| ||||| ||||||| ||||    
T  12914332 tttttatatgtgtgatcaaacactatttatttatatttgtaactatgaaagaatacctc 12914390  T

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Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 213 - 302
Target Start/End: Complemental strand, 35907688 - 35907593
Alignment:
Q  213 ccctgattcattaattttagcttccaatcttctattatctccattgac----acac--tcatcttgagcagaagaatctattacaacacaggtctc 302  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||    ||||  ||| ||||||||||||||||||||||||||||||||||    
T  35907688 ccctgattcattagttttagcttccaattttctattatctccattgacagtgacacgttcaacttgagcagaagaatctattacaacacaggtctc 35907593  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 311
Target Start/End: Complemental strand, 35915298 - 35915196
Alignment:
Q  214 cctgattcattaattttagcttccaatcttctattatct---ccattg--acacactcatcttgagcagaagaatctattacaacacaggtctcaagttc 308  Q
    |||| ||||||| |||||||||||||| |||||||||||   ||||||  | ||||||| | ||||||| ||||||||||| | |||||||||||||| |    
T  35915298 cctggttcattagttttagcttccaattttctattatctccaccattgccaaacactcaacctgagcaggagaatctattatatcacaggtctcaagtgc 35915199  T
Q  309 ttc 311  Q
    |||    
T  35915198 ttc 35915196  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 130
Target Start/End: Original strand, 40395940 - 40395999
Alignment:
Q  71 tttttatatgtgtgaccaaacactgttcatttatgtttgtgactataaaagaatgcctct 130  Q
    |||||||||||||||| ||||||| |||||||||||||||| | ||  ||||||||||||    
T  40395940 tttttatatgtgtgacaaaacactattcatttatgtttgtgtccatgcaagaatgcctct 40395999  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 404026 - 404087
Alignment:
Q  70 ctttttatatgtgtgaccaaacactgttcatttatgtttgtgactataaaagaatgcctctt 131  Q
    ||||| || ||||||  |||||||| ||||||||||||||||||| ||||||||| ||||||    
T  404026 cttttaatgtgtgtgctcaaacactattcatttatgtttgtgactgtaaaagaattcctctt 404087  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 6048665 - 6048711
Alignment:
Q  79 tgtgtgaccaaacactgttcatttatgtttgtgactataaaagaatg 125  Q
    |||||||||||||||| ||||||| |||||||||| ||| |||||||    
T  6048665 tgtgtgaccaaacactattcatttgtgtttgtgaccatagaagaatg 6048711  T

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Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 213 - 302
Target Start/End: Complemental strand, 33911081 - 33910986
Alignment:
Q  213 ccctgattcattaattttagcttccaatcttctattatctccattgac----acac--tcatcttgagcagaagaatctattacaacacaggtctc 302  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||    ||||  ||| |||||||||||||||||||||||| |||||||||    
T  33911081 ccctgattcattagttttagcttccaattttctattatctccattgacagtgacacgttcaacttgagcagaagaatctattacaatacaggtctc 33910986  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 42508022 - 42508065
Alignment:
Q  86 ccaaacactgttcatttatgtttgtgactataaaagaatgcctc 129  Q
    |||||||||||||||||||||| |||||||||||||||| ||||    
T  42508022 ccaaacactgttcatttatgttagtgactataaaagaattcctc 42508065  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 13293363 - 13293408
Alignment:
Q  79 tgtgtgaccaaacactgttcatttatgtttgtgactataaaagaat 124  Q
    |||||| ||||||||| |||||||||| ||||||||||||| ||||    
T  13293363 tgtgtgcccaaacactattcatttatgcttgtgactataaatgaat 13293408  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 11022653 - 11022617
Alignment:
Q  88 aaacactgttcatttatgtttgtgactataaaagaat 124  Q
    ||||||||| |||||||||||||||||||||||||||    
T  11022653 aaacactgtgcatttatgtttgtgactataaaagaat 11022617  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 118
Target Start/End: Complemental strand, 7026553 - 7026516
Alignment:
Q  81 tgtgaccaaacactgttcatttatgtttgtgactataa 118  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  7026553 tgtgtccaaacactattcatttatgtttgtgactataa 7026516  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 12764465 - 12764511
Alignment:
Q  79 tgtgtgaccaaacactgttcatttatgtttgtgactataaaagaatg 125  Q
    |||||||||||| ||| |||||||||||||||||||||  |||||||    
T  12764465 tgtgtgaccaaatacttttcatttatgtttgtgactatgcaagaatg 12764511  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 124
Target Start/End: Original strand, 12424649 - 12424677
Alignment:
Q  96 ttcatttatgtttgtgactataaaagaat 124  Q
    |||||||||||||||||||||||||||||    
T  12424649 ttcatttatgtttgtgactataaaagaat 12424677  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 28956177 - 28956125
Alignment:
Q  75 tatatgtgtgaccaaacactgttcatttatgtttgtgactataaaagaatgcc 127  Q
    ||||||| ||| |||||||| ||||||| ||||||  ||||||||||||||||    
T  28956177 tatatgtatgatcaaacactattcatttgtgtttgcaactataaaagaatgcc 28956125  T

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