View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_88 (Length: 352)
Name: NF8518A_low_88
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_88 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 7 - 341
Target Start/End: Original strand, 26688950 - 26689283
Alignment:
| Q |
7 |
ggtttttctctcttaatcgaattttatctatgagagactaaattgggagtttactcattcatttaatttacagtttaaactaagtnnnnnnnttcaaaat |
106 |
Q |
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| T |
26688950 |
ggtttttctctcttaatcgaattttctctatgagagattaaatttggagtttactcattcattttatttacagtttaaactaagtaaaaaa-ttcaaaat |
26689048 |
T |
|
| Q |
107 |
tccacccaaagtttaaaagaatctcttgactcacaagagagactaaccaataatatacaatgatctgaacacaacaggcttacccccaaataatcctgtt |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26689049 |
tccacccaaagtttaaaagaatctcttgactcacaagagagactaaccaataatatacaatcatctgaacacaacaggcttacccccaaataatcctgtt |
26689148 |
T |
|
| Q |
207 |
ctgtgaaagtgaaactatttggaagtattttcaaatactatgatgcattttgtgattgattgttgcttcccagctgtaactggacccttctgttgtcttc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26689149 |
ctgtgaaagtgaaactatttggaagtattttcaaatactatgatgcattttgtgattgattgttgcttcccagctgtaactggacccttctgttgtcttc |
26689248 |
T |
|
| Q |
307 |
tttcttattagtctcttctaactctctattttcat |
341 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
26689249 |
tttcttattagtctcttctaactctctattttcat |
26689283 |
T |
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