View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_93 (Length: 349)
Name: NF8518A_low_93
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_93 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 25633569 - 25633218
Alignment:
| Q |
1 |
gataaagataaagaagtcggtaacatta-ttgttaatcattacttgcagcctaagcaactagatctaagagtgcttagctacactatagcatatgatagc |
99 |
Q |
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| T |
25633569 |
gataaagataaagaagtcggtaacattagttgttaatcattacttgcagcctaagcaactagatctaagagtacttagctacactatagtatatgatagc |
25633470 |
T |
|
| Q |
100 |
ttaattaatgtacacaaacatatgtctatatatacttgctgtaacagatac--ttcattaatgagaataatacttttccatacatttttctggtttccta |
197 |
Q |
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| T |
25633469 |
ttaattaatgtacacaaacatatgtctatatatacttgctgtaacagatacacttcatcaatgagaataatacttctccattcatttttctggtttccta |
25633370 |
T |
|
| Q |
198 |
atattgttctaaccgttttctgttgtgcattcttccttgttcatcttcttggatcgatttcttcacgatcctttgtttctgattgcagattctgcattca |
297 |
Q |
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| T |
25633369 |
atattgttctaaccgttttttgttgtgcattcttcgttgttcatcttcttggatcgatttcttcacgatcctttgtttctgattgcagattctgcattca |
25633270 |
T |
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| Q |
298 |
atcatcgtttttct-tgt-----gttactctgtctttggttcgattgaattc |
343 |
Q |
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| T |
25633269 |
atcatcgtttttctgtgtttcacgatcctctgtctttggttcgattgaattc |
25633218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 143
Target Start/End: Complemental strand, 28669586 - 28669485
Alignment:
| Q |
38 |
attacttgcagcctaagcaactagatctaagagtgcttagctacactatagcatatgatagcttaattaatgtacacaaacata-tgtctatatatactt |
136 |
Q |
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| T |
28669586 |
attacttgcagtctaagcaactag-tcgcagagtaattagctacactataacacatgatagcttaat----gtagacaagcattctgtctatatatactt |
28669492 |
T |
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| Q |
137 |
gctgtaa |
143 |
Q |
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||||||| |
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| T |
28669491 |
gctgtaa |
28669485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 293
Target Start/End: Original strand, 11922145 - 11922225
Alignment:
| Q |
213 |
ttttctgttgtgcattcttccttgttcatcttcttggatcgatttcttcacgatcctttgtttctgattgcagattctgca |
293 |
Q |
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||||||| | |||||| || ||| |||||||||| ||||| |||||||| ||| ||||| | ||||||||||||||||| |
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| T |
11922145 |
ttttctgctatgcatttctctttgatcatcttcttcgatcgttttcttcaagattctttgcatttgattgcagattctgca |
11922225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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