View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8518A_low_98 (Length: 338)

Name: NF8518A_low_98
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8518A_low_98
NF8518A_low_98
[»] chr5 (6 HSPs)
chr5 (12-338)||(7141630-7141956)
chr5 (34-338)||(7154400-7154704)
chr5 (34-335)||(7131909-7132210)
chr5 (190-335)||(41305312-41305457)
chr5 (193-254)||(31177694-31177755)
chr5 (241-329)||(41337787-41337875)
[»] chr3 (1 HSPs)
chr3 (193-335)||(22986265-22986407)
[»] chr8 (1 HSPs)
chr8 (175-338)||(23610187-23610350)
[»] chr6 (2 HSPs)
chr6 (258-337)||(12425274-12425353)
chr6 (260-337)||(12268332-12268409)
[»] chr4 (1 HSPs)
chr4 (258-337)||(55954947-55955026)
[»] chr2 (1 HSPs)
chr2 (292-337)||(41795747-41795792)


Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 12 - 338
Target Start/End: Complemental strand, 7141956 - 7141630
Alignment:
Q  12 gagttagacatcatatattgttggaatcaaacacaactcatttttccttccaactgttagtccaaaatcttctatcatatccaaatcctgagacttcatc 111  Q
    ||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7141956 gagttagacatcataaacagttggaatcaaacacaactcatttttccttccaactgttagtccaaaatcttctatcatatccaaatcctgagacttcatc 7141857  T
Q  112 tgatttgggagttcccagttaaagtgatagagcaatagagccaaaggaaatataacacttgctaaaccaaaggtcatacccggacacattctccttccag 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7141856 tgatttgggagttcccagttaaagtgatagagcaatagagccaaaggaaatataacacttgctaaaccaaaggtcatacccggacacattctccttccag 7141757  T
Q  212 ctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaactatcatcaaacctctctggaataaacctctcagcatcattccaatatttagg 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7141756 ctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaactatcatcaaacctctctggaataaacctctcagcatcattccaatatttagg 7141657  T
Q  312 atctcttcctattgcccatgcatttat 338  Q
    |||||||||||||||||| ||||||||    
T  7141656 atctcttcctattgcccacgcatttat 7141630  T

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Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 34 - 338
Target Start/End: Complemental strand, 7154704 - 7154400
Alignment:
Q  34 ggaatcaaacacaactcatttttccttccaactgttagtccaaaatcttctatcatatccaaatcctgagacttcatctgatttgggagttcccagttaa 133  Q
    |||||||||||||||||||||| |||||||||||  | ||||| || |||  ||||||||||||||| ||  |||||||||||||| |||||||| ||||    
T  7154704 ggaatcaaacacaactcattttcccttccaactgccaatccaacattttcagtcatatccaaatcctcaggtttcatctgatttggtagttcccaattaa 7154605  T
Q  134 agtgatagagcaatagagccaaaggaaatataacacttgctaaaccaaaggtcatacccggacacattctccttccagctccgaaaggaatgtactcgaa 233  Q
    | ||||| || |||| ||| | |||||  |||||||| |||| |||||| | ||| || ||||||||||| |||||||| || |||||||| ||||| ||    
T  7154604 aatgatatagtaataaagcaagaggaagcataacactagctataccaaatgacatgcctggacacattcttcttccagcaccaaaaggaatatactcaaa 7154505  T
Q  234 gttatttcctttgaaatcaatcaaactatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgca 333  Q
     ||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| |||||||||  ||||||||| | | ||||||||||    
T  7154504 attatttcctttgaaatcaatcaaactaccatcaaacctctctggaatgaacatctcagcatcagtccaatattgtggatctcttgccactgcccatgca 7154405  T
Q  334 tttat 338  Q
    |||||    
T  7154404 tttat 7154400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 34 - 335
Target Start/End: Complemental strand, 7132210 - 7131909
Alignment:
Q  34 ggaatcaaacacaactcatttttccttccaactgttagtccaaaatcttctatcatatccaaatcctgagacttcatctgatttgggagttcccagttaa 133  Q
    |||||||||||||| ||| ||||| ||||||  |  | |||| ||| |||  ||||||||||||||  ||  ||||||| ||| || |||||||| ||||    
T  7132210 ggaatcaaacacaaatcacttttctttccaatagccaatccataatgttcagtcatatccaaatccataggtttcatcttattaggaagttcccaattaa 7132111  T
Q  134 agtgatagagcaatagagccaaaggaaatataacacttgctaaaccaaaggtcatacccggacacattctccttccagctccgaaaggaatgtactcgaa 233  Q
    | ||||| || |||| ||||| |||||  |||| ||  |||| ||||||   ||  || || || ||||| || || ||||| |||||||  || || ||    
T  7132110 aatgataaagtaataaagccacaggaagcataataccagctataccaaattgcaagccagggcaaattcttctacctgctccaaaaggaagatattcaaa 7132011  T
Q  234 gttatttcctttgaaatcaatcaaactatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgca 333  Q
     ||||| ||| | ||||||||  ||||| | ||||| ||||||||| ||||| ||||||||||| ||||||||| |||||| ||| | || |||||| ||    
T  7132010 attattccctctaaaatcaatagaactaccttcaaatctctctggattaaacatctcagcatcagtccaatattgaggatcccttgccatagcccataca 7131911  T
Q  334 tt 335  Q
    ||    
T  7131910 tt 7131909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 335
Target Start/End: Complemental strand, 41305457 - 41305312
Alignment:
Q  190 cccggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaactatcatcaaacctctctggaataaacctct 289  Q
    ||||||||||| ||||||||||| || || || ||||| || ||||   | ||||||||||||||  | |||| | |||||||||| ||  |||| ||||    
T  41305457 cccggacacatcctccttccagcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattgagctattaacaaacctctcgggtttaaaactct 41305358  T
Q  290 cagcatcattccaatatttaggatctcttcctattgcccatgcatt 335  Q
    |||| |||  |||||| || ||||||||||| || ||||| |||||    
T  41305357 cagcttcaacccaatactttggatctcttccaatcgcccaagcatt 41305312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 31177694 - 31177755
Alignment:
Q  193 ggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaat 254  Q
    ||||||||||| |||||||| ||||| || |||||||| |||||  | ||||||||||||||    
T  31177694 ggacacattcttcttccagcaccgaacggtatgtactcaaagtttgtacctttgaaatcaat 31177755  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 329
Target Start/End: Complemental strand, 41337875 - 41337787
Alignment:
Q  241 cctttgaaatcaatcaaactatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgccca 329  Q
    ||||||||||||||  | |||| | |||||||||| ||  |||| |||||||| |||  |||||| || ||||||||||| ||||||||    
T  41337875 cctttgaaatcaattgagctattaacaaacctctcaggtttaaaactctcagcttcaacccaatactttggatctcttccaattgccca 41337787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 193 - 335
Target Start/End: Original strand, 22986265 - 22986407
Alignment:
Q  193 ggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaactatcatcaaacctctctggaataaacctctcag 292  Q
    ||||| |||||||||||||| || || ||||||||||| || ||| ||||||||||||||||  ||||||||  ||||||||| |||  |||| | || |    
T  22986265 ggacaaattctccttccagcaccaaatggaatgtactcaaaattagttcctttgaaatcaatagaactatcaataaacctctcaggataaaacttatcgg 22986364  T
Q  293 catcattccaatatttaggatctcttcctattgcccatgcatt 335  Q
      |||||||||||||||||||| | ||| || ||||| |||||    
T  22986365 ggtcattccaatatttaggatcccgtccaatggcccaagcatt 22986407  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 338
Target Start/End: Original strand, 23610187 - 23610350
Alignment:
Q  175 aaaccaaaggtcatacccggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaactatcatcaaacctct 274  Q
    |||||| || |||| || ||||| |||||||| ||||| || || |||||| |||| || ||| |||||  |||||||||  | ||||||  |||||| |    
T  23610187 aaaccatagttcatgccgggacaaattctcctaccagcaccaaatggaatgaactcaaaattagttcctgagaaatcaatagagctatcaataaaccttt 23610286  T
Q  275 ctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcatttat 338  Q
    | |||  |||| | || |  |||||||||||||||||||| |||||||||||||| ||||||||    
T  23610287 caggataaaacttatctgggtcattccaatatttaggatcccttcctattgcccaagcatttat 23610350  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 337
Target Start/End: Original strand, 12425274 - 12425353
Alignment:
Q  258 actatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcattta 337  Q
    |||||||| ||||||||| || |||||| |||||||||||  ||||| ||  ||||||||||| ||||||||||||||||    
T  12425274 actatcatgaaacctctccggtataaacttctcagcatcagaccaatgttcgggatctcttccaattgcccatgcattta 12425353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 337
Target Start/End: Complemental strand, 12268409 - 12268332
Alignment:
Q  260 tatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcattta 337  Q
    |||||| ||||||||| || |||||| |||| ||||||  |||||  || ||||||||||| ||||||||||||||||    
T  12268409 tatcatgaaacctctcaggtataaacttctctgcatcagaccaatgattgggatctcttccaattgcccatgcattta 12268332  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 337
Target Start/End: Original strand, 55954947 - 55955026
Alignment:
Q  258 actatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcattta 337  Q
    |||||||| |||||| || || |||||| |||  ||||||| ||||| ||| ||||||||||| ||||||||||||||||    
T  55954947 actatcattaaacctttcaggtataaacttctttgcatcataccaatgtttgggatctcttccaattgcccatgcattta 55955026  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 337
Target Start/End: Original strand, 41795747 - 41795792
Alignment:
Q  292 gcatcattccaatatttaggatctcttcctattgcccatgcattta 337  Q
    |||||||  |||||||| ||||||||||| ||||||||||||||||    
T  41795747 gcatcatatcaatatttgggatctcttccgattgcccatgcattta 41795792  T

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