View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8518_high_11 (Length: 243)

Name: NF8518_high_11
Description: NF8518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8518_high_11
NF8518_high_11
[»] chr2 (16 HSPs)
chr2 (19-243)||(9292365-9292589)
chr2 (81-239)||(9283721-9283879)
chr2 (19-243)||(9316465-9316689)
chr2 (19-243)||(9357620-9357841)
chr2 (78-243)||(9329036-9329201)
chr2 (57-243)||(10353558-10353744)
chr2 (80-243)||(9060665-9060828)
chr2 (78-243)||(9321413-9321578)
chr2 (19-157)||(9275044-9275182)
chr2 (81-150)||(10372391-10372460)
chr2 (57-150)||(10348312-10348405)
chr2 (187-243)||(10336281-10336337)
chr2 (187-243)||(10348228-10348284)
chr2 (193-239)||(8573142-8573188)
chr2 (187-243)||(10372307-10372363)
chr2 (182-243)||(7115271-7115332)
[»] chr3 (1 HSPs)
chr3 (19-243)||(37462935-37463159)
[»] chr4 (1 HSPs)
chr4 (57-243)||(26575310-26575496)
[»] scaffold0667 (2 HSPs)
scaffold0667 (187-242)||(4921-4976)
scaffold0667 (19-139)||(5018-5138)
[»] chr8 (2 HSPs)
chr8 (189-243)||(41966362-41966416)
chr8 (81-137)||(41966254-41966310)
[»] chr1 (4 HSPs)
chr1 (189-236)||(29467429-29467476)
chr1 (189-240)||(29423708-29423759)
chr1 (192-243)||(29452955-29453006)
chr1 (193-243)||(29442970-29443020)


Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 9292589 - 9292365
Alignment:
Q  19 gtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttacgcccctaacgaaatcacagtcttgaaccctaacactcataaacatag 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9292589 gtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttacgcccctaacgaaatcacagtcttgaaccctaacactcataaacatcg 9292490  T
Q  119 gattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatcgcgcaggtgtatgcgttcacggcttcggttatgatccatta 218  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9292489 gattatcccttttctccctcttgctatccctaacattctcgagtctgaaaacattgatcgcgccggtgtatgcgttcacggcttcggttatgatccatta 9292390  T
Q  219 accggcgattacaaactcctcagaa 243  Q
    |||||||||||||||||||||||||    
T  9292389 accggcgattacaaactcctcagaa 9292365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 81 - 239
Target Start/End: Original strand, 9283721 - 9283879
Alignment:
Q  81 gaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatcgcg 180  Q
    ||||||||| ||| |||| ||||||| | ||||||| ||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||| ||||    
T  9283721 gaaatcacaatctggaacactaacacccgtaaacattggattatcccttttctccctcttcctatccctaacattgtggagtctgaaaacattgaacgcg 9283820  T
Q  181 caggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctc 239  Q
      ||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||    
T  9283821 gcggtgtatgcattcacggcttcggttttgatcctttaaccggcgattacaaactcctc 9283879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 9316689 - 9316465
Alignment:
Q  19 gtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttacgcccctaacgaaatcacagtcttgaaccctaacactcataaacatag 118  Q
    |||||||||| ||||||||||||||| | ||||||   |||| ||||||||||| | | |||||||||||| ||| |||||||||||| | ||||||| |    
T  9316689 gtaacggccttctcgccatttccaatggtcaaatcgctttcatgcatccttacggcgccaacgaaatcacaatctggaaccctaacacccgtaaacatcg 9316590  T
Q  119 gattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatcgcgcaggtgtatgcgttcacggcttcggttatgatccatta 218  Q
     ||||||||||| || |||||||||||||||||||||||||| ||||| ||     ||||||  ||| ||||||||||||||||||||| |||||||| |    
T  9316589 tattatccctttccttcctcttgctatccctaacattcttgaatctgacaaacccaatcgcggcggtatatgcgttcacggcttcggttttgatccatca 9316490  T
Q  219 accggcgattacaaactcctcagaa 243  Q
    || || |||||||||||||||||||    
T  9316489 acaggtgattacaaactcctcagaa 9316465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 9357841 - 9357620
Alignment:
Q  19 gtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttacgcccctaacgaaatcacagtcttgaaccctaacactcataaacatag 118  Q
    ||||||||||||||||||| |||||| || |||||   |||| ||||||| ||||| | ||||||||| || ||| ||||| |||||  | |||||||      
T  9357841 gtaacggcctcctcgccatctccaatggcgaaatcgctttcaggcatcctaacgccgccaacgaaatctcaatctggaaccataacatccgtaaacatca 9357742  T
Q  119 gattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatcgcgcaggtgtatgcgttcacggcttcggttatgatccatta 218  Q
     ||||||||||| ||||||||| ||||||||||||||||    |||   ||||||||  |||   |||||||||||||||||||||||| |||||| |||    
T  9357741 cattatccctttcctccctcttcctatccctaacattctccgatctttcaacattgacggcg---gtgtatgcgttcacggcttcggttttgatccttta 9357645  T
Q  219 accggcgattacaaactcctcagaa 243  Q
    |||||||||||||||||||||||||    
T  9357644 accggcgattacaaactcctcagaa 9357620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 78 - 243
Target Start/End: Complemental strand, 9329201 - 9329036
Alignment:
Q  78 aacgaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatc 177  Q
    |||||||||||| ||| |||||||||||| | ||||||| | ||||||||||| || |||||||||||||||||||||||||| ||||| |||||  |||    
T  9329201 aacgaaatcacaatctggaaccctaacacccgtaaacatcgtattatccctttcctacctcttgctatccctaacattcttgaatctgacaacatccatc 9329102  T
Q  178 gcgcaggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaa 243  Q
    ||       ||||||||||||| ||||||| |||||| ||| |||| |||||||||||||||||||    
T  9329101 gcttctccttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaa 9329036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 57 - 243
Target Start/End: Complemental strand, 10353744 - 10353558
Alignment:
Q  57 ttcacgcatccttacgcccctaacgaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattc 156  Q
    |||||||||||| ||||||| |||||||||||| | | |||||| ||||| | ||| ||| ||||||||||||||||||||||| |||||||||||||||    
T  10353744 ttcacgcatcctaacgcccccaacgaaatcacaatatggaaccccaacacccgtaagcatcggattatcccttttctccctcttcctatccctaacattc 10353645  T
Q  157 ttgagtctgaaaacattgatcgcgcaggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaa 243  Q
    |  | ||||| |||  | | || |   |  |||||||||| |||||||||| |||| |  || ||||||||||||||||||||||||    
T  10353644 tccaatctgacaaccctaaccgtggctgcttatgcgttcatggcttcggttttgattctgtatccggcgattacaaactcctcagaa 10353558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 80 - 243
Target Start/End: Original strand, 9060665 - 9060828
Alignment:
Q  80 cgaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatcgc 179  Q
    ||||| |||| ||| |||||||||||| |  ||| || |||  ||||||||| |||||||| ||||||||||||||   || ||||| |||    |||||    
T  9060665 cgaaaccacaatctggaaccctaacacccgcaaagatcggaccatcccttttatccctcttcctatccctaacattgaggactctgacaaccccaatcgc 9060764  T
Q  180 gcaggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaa 243  Q
    |  ||| ||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||    
T  9060765 ggcggtatatgcgttcacggcttcggttttgatccattcaccgccgattacaaactcctcagaa 9060828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 78 - 243
Target Start/End: Complemental strand, 9321578 - 9321413
Alignment:
Q  78 aacgaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatc 177  Q
    |||||||||||| ||| |||||||| ||||| ||| ||| | || |||||||| || |||||| |||||||| ||||| | || || || |||||  |||    
T  9321578 aacgaaatcacaatctggaaccctagcactcgtaagcatcgtatgatccctttcctacctcttcctatccctgacattatggaatccgacaacatcaatc 9321479  T
Q  178 gc-gcaggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaa 243  Q
    || || | | |||||||||| || ||||||| |||||| ||||||||||||||||||||||||||||    
T  9321478 gctgctgct-tatgcgttcatggtttcggttttgatcctttaaccggcgattacaaactcctcagaa 9321413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 9275182 - 9275044
Alignment:
Q  19 gtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttacgcccctaacgaaatcacagtcttgaaccctaacactcataaacatag 118  Q
    ||||||||||| | || || |||||| |||||| |  ||||| ||||||| |||   | || ||||| ||| ||| ||||||||||||   ||||||| |    
T  9275182 gtaacggcctcattgctatctccaatggccaaaccgccttcaggcatcctgacgatgcaaatgaaattacaatctggaaccctaacaccggtaaacatcg 9275083  T
Q  119 gattatcccttttctccctcttgctatccctaacattct 157  Q
    |||||||||||||||||||||| |||| |||||||||||    
T  9275082 gattatcccttttctccctcttcctatacctaacattct 9275044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 10372460 - 10372391
Alignment:
Q  81 gaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatcccta 150  Q
    ||||||||| ||| |||||||||||| | |||||||||| |||||||||||||||||||| |||| ||||    
T  10372460 gaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 10372391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 150
Target Start/End: Complemental strand, 10348405 - 10348312
Alignment:
Q  57 ttcacgcatccttacgcccctaacgaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatcccta 150  Q
    |||||||||||| ||  ||  |||||||||||| ||| |||||||||||| | |||||||   ||||||||||||||||||||| |||| ||||    
T  10348405 ttcacgcatcctaacaacctcaacgaaatcacaatctggaaccctaacacccgtaaacatcacattatcccttttctccctcttcctattccta 10348312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 10336337 - 10336281
Alignment:
Q  187 tatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaa 243  Q
    ||||||||||||| ||||||| |||| ||||| ||| ||||||||||||||||||||    
T  10336337 tatgcgttcacggattcggttttgattcattatccgccgattacaaactcctcagaa 10336281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 10348284 - 10348228
Alignment:
Q  187 tatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaa 243  Q
    ||||||||||||||||||||| ||||| | || |||| |||||||||||||||||||    
T  10348284 tatgcgttcacggcttcggttttgatcaaatatccggtgattacaaactcctcagaa 10348228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 239
Target Start/End: Original strand, 8573142 - 8573188
Alignment:
Q  193 ttcacggcttcggttatgatccattaaccggcgattacaaactcctc 239  Q
    ||||||||||||||| ||||| |||||||| ||||||||||||||||    
T  8573142 ttcacggcttcggttttgatctattaaccgccgattacaaactcctc 8573188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 10372363 - 10372307
Alignment:
Q  187 tatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaa 243  Q
    |||||||||| |||||||||| |||| | ||| |||||||| |||||||||||||||    
T  10372363 tatgcgttcatggcttcggttttgattctttatccggcgatcacaaactcctcagaa 10372307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 7115271 - 7115332
Alignment:
Q  182 aggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaa 243  Q
    |||| ||||| ||||||||||||||| |||||| ||||| |  ||||||||||| |||||||    
T  7115271 aggtctatgctttcacggcttcggttttgatcctttaacagatgattacaaacttctcagaa 7115332  T

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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 37463159 - 37462935
Alignment:
Q  19 gtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttacgcccctaacgaaatcacagtcttgaaccctaacactcataaacatag 118  Q
    |||||||||||||||| || |||||| ||||||||   |||||||||||| ||||| | |||||||||||| ||| |||||||||||| | |||||||      
T  37463159 gtaacggcctcctcgctatctccaatggccaaatcgctttcacgcatcctaacgccgccaacgaaatcacaatctggaaccctaacacacgtaaacatct 37463060  T
Q  119 gattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatcgcgcaggtgtatgcgttcacggcttcggttatgatccatta 218  Q
    ||||||||||||||||||| |  || ||||| ||||| | || ||  | |||  | | ||||   |  ||||||||||||||||||||| |||| | |||    
T  37463059 gattatcccttttctccctatgcctgtcccttacattatggaatcaaacaaccctaaccgcggctgcttatgcgttcacggcttcggttttgattcttta 37462960  T
Q  219 accggcgattacaaactcctcagaa 243  Q
    |||||||||||||||||||||||||    
T  37462959 accggcgattacaaactcctcagaa 37462935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 57 - 243
Target Start/End: Complemental strand, 26575496 - 26575310
Alignment:
Q  57 ttcacgcatccttacgcccctaacgaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattc 156  Q
    |||||||||||  ||||||| ||||||||| || ||| ||||||| ||||   |||| || ||||||||||||||||||||||| | |||||||||||||    
T  26575496 ttcacgcatcccaacgcccccaacgaaatcgcaatctggaacccttacaccggtaaatatcggattatcccttttctccctcttcccatccctaacattc 26575397  T
Q  157 ttgagtctgaaaacattgatcgcgcaggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaa 243  Q
    |  | ||||| |||  | |||| |   |  ||||||||||||||||||||| |||| | ||| ||||||||||||||||||||||||    
T  26575396 tccaatctgacaaccctaatcgtggctgcttatgcgttcacggcttcggttttgattctttatccggcgattacaaactcctcagaa 26575310  T

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Target: scaffold0667 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 4976 - 4921
Alignment:
Q  187 tatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcaga 242  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||    
T  4976 tatgcgttcacggcttcggttttgatcctttaaccggcgattacaaaatcctcaga 4921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 5138 - 5018
Alignment:
Q  19 gtaacggcctcctcgccatttccaatagccaaatctgct-tcacgcatccttacgcccctaacgaaatcacagtcttgaaccctaacactcataaacata 117  Q
    ||||||||||||||||| |||||||  || ||||| ||| |||  |||||| ||||| | |||||||||||| ||| |||||||||||  | |||||||     
T  5138 gtaacggcctcctcgccgtttccaacggcgaaatc-gctctcagacatcctaacgccgccaacgaaatcacaatctggaaccctaacatccgtaaacatc 5040  T
Q  118 ggattatcccttttctccctct 139  Q
      ||||||||||||||||||||    
T  5039 acattatcccttttctccctct 5018  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 41966362 - 41966416
Alignment:
Q  189 tgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaa 243  Q
    ||||||||||| ||||||| ||||||||||||| ||||| |||||||||||||||    
T  41966362 tgcgttcacggattcggttttgatccattaaccagcgatcacaaactcctcagaa 41966416  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 41966254 - 41966310
Alignment:
Q  81 gaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccct 137  Q
    ||||||||| ||| |||||||||||    ||||||| ||||||||||||||||||||    
T  41966254 gaaatcacattctggaaccctaacatctgtaaacatcggattatcccttttctccct 41966310  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 29467429 - 29467476
Alignment:
Q  189 tgcgttcacggcttcggttatgatccattaaccggcgattacaaactc 236  Q
    ||||||||||||||||||| ||||||||||||||  ||||||||||||    
T  29467429 tgcgttcacggcttcggttttgatccattaaccgatgattacaaactc 29467476  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 29423759 - 29423708
Alignment:
Q  189 tgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctca 240  Q
    |||||| |||||||||||| |||||||||||| |  ||||||||||||||||    
T  29423759 tgcgtttacggcttcggttttgatccattaactgatgattacaaactcctca 29423708  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 29452955 - 29453006
Alignment:
Q  192 gttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaa 243  Q
    ||||||||||| |||| |||||| |||| || ||||||||||||||||||||    
T  29452955 gttcacggctttggttttgatccgttaaacgtcgattacaaactcctcagaa 29453006  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 29442970 - 29443020
Alignment:
Q  193 ttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaa 243  Q
    ||||||||||||||| ||||||||| |||  ||||||||||||| ||||||    
T  29442970 ttcacggcttcggttttgatccattgaccaacgattacaaactcatcagaa 29443020  T

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