View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518_high_2 (Length: 420)
Name: NF8518_high_2
Description: NF8518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 9 - 321
Target Start/End: Complemental strand, 23519231 - 23518918
Alignment:
| Q |
9 |
tggtggtgcacatgtattcaagaaaaatattcgtttctgttttcaagtaatctggttgacttgtatatagattaactgaaaggagcgtaatgccaagann |
108 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
23519231 |
tggtagtgcacatgtattcaagaaaaatatttgtttctgttttcaagtaatctggttgacttgtatatggattaactgaaaggagcgtaatgccaagaat |
23519132 |
T |
|
| Q |
109 |
nnnnnnnn-aacaaagagcttttgttgaaacaattattagattctatcaatattcattctagactcataatcttatttctgttgttgattttaacttata |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23519131 |
tttttttttaacaaagagcttttgttgaaacaattattagattctatcaatattcattctagactcataatcttatttatgttgttgattttaacttata |
23519032 |
T |
|
| Q |
208 |
gtggtttaatccattgctttgcattggcttatttactatgtaatttttcttttcatccttgtgatggtctccttggttgtattgttgacacttttttctt |
307 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
23519031 |
gtggtttaatccattgatttgcattggcttatttactatgtaatttttcttttcatccttgtgatggtccccttggttgtattgttgacacttttttctt |
23518932 |
T |
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| Q |
308 |
tccctctaaggaac |
321 |
Q |
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|||||||||||||| |
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| T |
23518931 |
tccctctaaggaac |
23518918 |
T |
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