View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518_high_5 (Length: 372)
Name: NF8518_high_5
Description: NF8518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 6179572 - 6179909
Alignment:
| Q |
1 |
ctttattttgtgagtgttgattttctcactcacactttctttctcactcttacaaaattagagccacaaatctctcgttgtttctagcatcaaactcttt |
100 |
Q |
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| T |
6179572 |
ctttattttgtgagtgttgattttctcactcacactttctttctcactcttacaaaattagagccacaaatctctcgttgtttctagcatcaaactcttt |
6179671 |
T |
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| Q |
101 |
ctctcatccacacaaaaacccacactctcaaaatgtttcttgcatctatctctatttcttcattttcgatctagtctcctttgtcttattgaaaactcat |
200 |
Q |
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| T |
6179672 |
ctctcat------------ccacactctcaaaatgtttcttgcatctatctctattttttcattttcgatct--tctcctttgtcttattgaaaactcat |
6179757 |
T |
|
| Q |
201 |
cgttcaatgatgagttttatatttaataaaaatattnnnnnnnnttaaaatcatggnnnnnnnnggcaactcaaccgaattctacacatacttcaaataa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | |||||||| |
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| T |
6179758 |
cgttcaatgatgagttttatatttaataaaaatatt-aaaaaaattaaaatcatggttttttt--gcaactcaaccgaattctacacatgcatcaaataa |
6179854 |
T |
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| Q |
301 |
tgtgtaccacatctgaatgagatttgataagtcttgtgtttttaactcattaaat |
355 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6179855 |
tgtgtaccacatctgaatgtgatttgataagtcttgtgtttttaactcattaaat |
6179909 |
T |
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