View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518_high_8 (Length: 285)
Name: NF8518_high_8
Description: NF8518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518_high_8 |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: scaffold0224 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 564 - 831
Alignment:
| Q |
1 |
tgctgaacattaaccagggggaacatattcctttctaaggtttttgatttttgtatttaatttatttgatggaaaataaaattggtacagtagtaatgat |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
564 |
tgctgaacattaaccggggggaacatattcctttctaaggtttttgatttttgtatttaatttattttatggaaaataaaattggtacagtagtaatgat |
663 |
T |
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| Q |
101 |
ttgattacagtttggaaggaaggaaggcacgggaaaagcgcaagaagagggaagttacggtaaaaaagaagtgtttgtgacagtcaaatcatggaagtta |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
664 |
ttgattacggtttggaaggaaggaaggcacgggaaaagcgcaagaagggggaagttacggtaaaaaagaagtgttggtgacagtcaaatcatggaagtta |
763 |
T |
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| Q |
201 |
taaaaatcattactcctttacttcattcaccttccatgcttgtctgtgtctcatggacatttcatatg |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
764 |
taaaaatcattactcctttacttcattcaccttccatgcttgtctgtgtctcatggacatttcatatg |
831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 42904322 - 42904055
Alignment:
| Q |
1 |
tgctgaacattaaccagggggaacatattcctttctaaggtttttgatttttgtatttaatttatttgatggaaaataaaattggtacagtagtaatgat |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42904322 |
tgctgaacattaaccggggggaacatattcctttctaaggtttttgatttttgtatttaatttattttatggaaaataaaattggtacagtagtaatgat |
42904223 |
T |
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| Q |
101 |
ttgattacagtttggaaggaaggaaggcacgggaaaagcgcaagaagagggaagttacggtaaaaaagaagtgtttgtgacagtcaaatcatggaagtta |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42904222 |
ttgattacggtttggaaggaaggaaggcacgggaaaagcgcaagaagggggaagttacggtaaaaaagaagtgttggtgacagtcaaatcatggaagtta |
42904123 |
T |
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| Q |
201 |
taaaaatcattactcctttacttcattcaccttccatgcttgtctgtgtctcatggacatttcatatg |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42904122 |
taaaaatcattactcctttacttcattcaccttccatgcttgtctgtgtctcatggacatttcatatg |
42904055 |
T |
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