View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518_low_11 (Length: 278)
Name: NF8518_low_11
Description: NF8518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 12 - 262
Target Start/End: Complemental strand, 42337430 - 42337180
Alignment:
| Q |
12 |
gcatacatatatgagaagaaacgttatattgattgaaaggataaagaaacaacatcacgtgtaaattaccacatagtttgattgccaattcacaggctgg |
111 |
Q |
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| T |
42337430 |
gcatacatatatgagaagaaacgttatattgattgaaaggataaagaaacaacatcacgtgtcaattaccacatagtttgattgccaattcacaggctgg |
42337331 |
T |
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| Q |
112 |
aaccatcactttgttgatgtggtcatagtcagcctgtttaattacacccatgtctagtgcataatctgcgtaagctttatactgaattgcaggatcagtg |
211 |
Q |
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| T |
42337330 |
aaccatcactttgttgatgtggtcatagtcagcctgtttaattacacccatgtctagtgcataatctgcgtaagctttatactgaattgcaggatcagtg |
42337231 |
T |
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| Q |
212 |
agtccattaccaatggcaaatccctgttcaaccatttcaaataagataaac |
262 |
Q |
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| T |
42337230 |
agtccattaccaatggcaaatccctgttcaaccatttcaaataagataaac |
42337180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 242
Target Start/End: Original strand, 19575869 - 19576040
Alignment:
| Q |
71 |
tgtaaattaccacatagtttgattgccaattcacaggctggaaccatcactttgttgatgtggtcatagtcagcctgtttaattacacccatgtctagtg |
170 |
Q |
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| T |
19575869 |
tgtaaattaccgcatagctttattgccaattcacaggctggaaccaacactttgccaagaagtgcatgtgtaacctttgtaattaagcccatctccagag |
19575968 |
T |
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| Q |
171 |
cataatctgcgtaagctttatactgaattgcaggatcagtgagtccattaccaatggcaaatccctgttcaa |
242 |
Q |
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| T |
19575969 |
cataatctgggtaggctttatactgaattgcaggattagtaagcccattaccaatggccagtccctgttcaa |
19576040 |
T |
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