View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518_low_13 (Length: 262)
Name: NF8518_low_13
Description: NF8518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518_low_13 |
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| [»] chr2 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 43875607 - 43875851
Alignment:
| Q |
18 |
acacacatctaagcattaaaaagcaaagatatttgaaaaatcgacccaacaaaaactaaagcctctaaatctctaaagggtaatgatggatagtacagga |
117 |
Q |
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| T |
43875607 |
acacacatctaagcattaaaaagcaaagatatttgaaaaatcgacccaacaaaaactaaagcctctaaatctctaaagggtaatgatggatagtacggga |
43875706 |
T |
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| Q |
118 |
tgataactatgaaaagctacgaattctgtttattgcttacactttgaatgccttaccaccatgtattccgtaaagtaaatatttttagtattaattcaag |
217 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43875707 |
tgataactacgaaaagctacgaattctgtttattgcttacactttgaatgtcgtaccaccatgtattccgtaaagtaaatatttttagtattaattcaag |
43875806 |
T |
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| Q |
218 |
tgatgattgtcaagctttaattgctactaccccatgatttgtgtt |
262 |
Q |
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| T |
43875807 |
tgatgattgtcaagctttaattgctactaccccatgatttgtgtt |
43875851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 93 - 262
Target Start/End: Complemental strand, 36596006 - 36595838
Alignment:
| Q |
93 |
aagggtaatgatggatagtacaggatgataactatgaaaagctacgaattctgtttattgcttacactttgaatgccttaccaccatgtattccgtaaag |
192 |
Q |
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||||||||||||| || |||| ||| |||||| |||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
36596006 |
aagggtaatgatgaatggtacgggaatgtaactacgaaaagctacgaattctgttaattgcttatactttgaatgccgtaccaccatgtattccgtaaag |
36595907 |
T |
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| Q |
193 |
taaatatttttagtattaattcaagtgatgattgtcaagctttaattgctactaccccatgatttgtgtt |
262 |
Q |
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| T |
36595906 |
taagtatttttagtatt-attcaagtgatgattgtcaagctttaattgccactgccccatgatttgtgtt |
36595838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 94 - 262
Target Start/End: Original strand, 48359843 - 48360011
Alignment:
| Q |
94 |
agggtaatgatggatagtacaggatgataactatgaaaagctacgaattctgtttattgcttacactttgaatgccttaccaccatgtattccgtaaagt |
193 |
Q |
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|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
48359843 |
agggtaatgatggatagtacgggatgataactacgaaaagctacgaattctgtttattgcttacactttgaatgccgtaccaccatgtattccgtaaagt |
48359942 |
T |
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| Q |
194 |
aaatatttttagtattaattcaagtgatgattgtcaagctttaattgctactaccccatgatttgtgtt |
262 |
Q |
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| T |
48359943 |
aaatatttttagtattaattcaagtgatgattgtcaagctttaattgctactaccccatgatttgtgtt |
48360011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 93 - 262
Target Start/End: Complemental strand, 13050625 - 13050456
Alignment:
| Q |
93 |
aagggtaatgatggatagtacaggatgataactatgaaaagctacgaattctgtttattgcttacactttgaatgccttaccaccatgtattccgtaaag |
192 |
Q |
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||||||||||||||||||||| ||||| |||||| |||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
13050625 |
aagggtaatgatggatagtacgggatggtaactacaaaaagctacgaattatatttattgcttacactttgaatgccgtaccaccatgtattccgtaaag |
13050526 |
T |
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| Q |
193 |
taaatatttttagtattaattcaagtgatgattgtcaagctttaattgctactaccccatgatttgtgtt |
262 |
Q |
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| T |
13050525 |
taaatatttttagtattaattcaagtgatgattgtcaaactttaattgctactaccccatgatttgtgtt |
13050456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 93 - 262
Target Start/End: Complemental strand, 33507126 - 33506957
Alignment:
| Q |
93 |
aagggtaatgatggatagtacaggatgataactatgaaaagctacgaattctgtttattgcttacactttgaatgccttaccaccatgtattccgtaaag |
192 |
Q |
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||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
33507126 |
aagggtaatgatggatagtacgggatggtaactacgaaaagctacgaattctgtttattgcttacactttgaatgtcgtaccaccatgtattccgtaaag |
33507027 |
T |
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| Q |
193 |
taaatatttttagtattaattcaagtgatgattgtcaagctttaattgctactaccccatgatttgtgtt |
262 |
Q |
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| T |
33507026 |
taaatatttttagtattaattcaagtgatgattgtcaagctttaattgctactaccccatgatttgtgtt |
33506957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 92 - 262
Target Start/End: Original strand, 25943237 - 25943406
Alignment:
| Q |
92 |
aaagggtaatgatggatagtacaggatgataactatgaaaagctacgaattctgtttattgcttacactttgaatgccttaccaccatgtattccgtaaa |
191 |
Q |
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||||||||||||||||| |||| ||||| |||||| |||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
25943237 |
aaagggtaatgatggatggtacgggatggtaactacgaaaagctacgaattctgttaattgcttacactttgaatgtcgtaccaccatgtattccgtaaa |
25943336 |
T |
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| Q |
192 |
gtaaatatttttagtattaattcaagtgatgattgtcaagctttaattgctactaccccatgatttgtgtt |
262 |
Q |
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|||| |||||| |||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
25943337 |
gtaagtattttcagtatt-attcaagtgatgattgtcaagctttaattgccactgccccatgatttgtgtt |
25943406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 92 - 262
Target Start/End: Complemental strand, 13150700 - 13150531
Alignment:
| Q |
92 |
aaagggtaatgatggatagtacaggatgataactatgaaaagctacgaattctgtttattgcttacactttgaatgccttaccaccatgtattccgtaaa |
191 |
Q |
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||||||||||||||||| |||| |||| |||||| |||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||| ||||| |
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| T |
13150700 |
aaagggtaatgatggatggtacgagatggtaactacgaaaagctacgaattctgttaattgcttacactttgaatgtcgtaccaccatgtattctgtaaa |
13150601 |
T |
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| Q |
192 |
gtaaatatttttagtattaattcaagtgatgattgtcaagctttaattgctactaccccatgatttgtgtt |
262 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
13150600 |
gtaagtatttttagtatt-attcaagtgatgattgtcaagctttaattgccactgccccatgatttgtgtt |
13150531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 115 - 262
Target Start/End: Complemental strand, 13002600 - 13002451
Alignment:
| Q |
115 |
ggatgataactatgaaaagctacgaattctgtttattgcttacactttgaatgccttaccaccatgtattccgtaaagtaaatatttttagtattaattc |
214 |
Q |
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||||| |||||| ||||||||||||||| |||| ||||||||||||||||||| | |||||||||||||||| |||||||| ||||||||| ||| |||| |
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| T |
13002600 |
ggatggtaactacgaaaagctacgaattatgttaattgcttacactttgaatgtcgtaccaccatgtattccataaagtaagtatttttagcatt-attc |
13002502 |
T |
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| Q |
215 |
aag---tgatgattgtcaagctttaattgctactaccccatgatttgtgtt |
262 |
Q |
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||| |||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
13002501 |
aagtgatgatgattgtcaagctttaattgccactgccccatgatttgtgtt |
13002451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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